View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_8 (Length: 432)
Name: NF4464_low_8
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 21 - 415
Target Start/End: Complemental strand, 8889328 - 8888934
Alignment:
| Q |
21 |
tggaggtggtggaggtggcggcggcggcggaagagctgatgaatgtgaaccagtcccagaagtccaagtataagaactcaaactaggactcatcggaggt |
120 |
Q |
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| T |
8889328 |
tggaggtggtggaggtggcggcggcggcggaagagctgatgaatgtgaaccagtcccagaagtccaagtataagaactcaaactaggactcatcggaggt |
8889229 |
T |
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| Q |
121 |
ggtggtggcggcattggcgacggagcacgcggcggcggtggtggaagaatgggttgtggctctggcggaagatggtggttaagatgagtggttttttcag |
220 |
Q |
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| T |
8889228 |
ggtggtggtggcattggcgacggagcacgcggcggcggtggtggaagaatgggttgtggctctggcggaagatggtggttaagatgagtggttttttcag |
8889129 |
T |
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| Q |
221 |
cgttagcaaagtgaaacaaagctgaaccagttgaacgaagagaacggatgtacataacatgtgaagctgaaaaagcatgtcttgcttcaaccaactgttt |
320 |
Q |
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| T |
8889128 |
cgttagcaaagtgaaacaaagctgaaccagttgaacgaagagaacggatgtacataacatgtgaagctgaaaaagcatgtcttgcttcaaccaactgttt |
8889029 |
T |
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| Q |
321 |
catgtaacgttttcttgatttgcaatgtgacactgtttcttctctctctactcttgaatagcaacaacccattttctttttcttcaactagatca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8889028 |
catgtaacgttttcttgatttgcaatgtgacactgtttcttctctgtctactcttgaatagcaacaacccattttctttttcttcaactagatca |
8888934 |
T |
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