View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465-Insertion-10 (Length: 294)
Name: NF4465-Insertion-10
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 24166744 - 24166458
Alignment:
| Q |
8 |
agatgcatatttagttcccgttacttgtacacgagatgttttatatttaatgagaattggtcagaaaaaccgcgctgtaggtgctacagccctaaatgag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
24166744 |
agatgcatatttagttcccgttacttgtacacgagatgttttatatttaatgagaattggtcagaaaaaccgcactgttggtgctacagccctaaatgag |
24166645 |
T |
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| Q |
108 |
agaagcagccgttctcataggtaaaattccatcttcactgacttgaatcctctacagccggctgcaccataaagtcgattgtagaggaccaatttttcat |
207 |
Q |
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| T |
24166644 |
agaagcagccgttctcataggtaaaattccatcttcactgacttgaatcatctacagccggctgcaccataaagtcgattgtagaggaccaaattttcat |
24166545 |
T |
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| Q |
208 |
cttcatgaatatagatggttaaataataacaatcagatttttatttgataaaattattgatccgatcgtattgcagtgttttgaccg |
294 |
Q |
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| T |
24166544 |
cttcatgaatatagatggttaaataataacaatcagatttttatttgataaaattattgatctgatcgtattgcagtgttttgaccg |
24166458 |
T |
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 42234449 - 42234324
Alignment:
| Q |
9 |
gatgcatatttagttcccgttacttgtacacgagatgttttatatttaatgagaattggtcagaaaaaccgcgctgtaggtgctacagccctaaatgaga |
108 |
Q |
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||||||| ||| ||||| |||| |||||| | ||||||| | ||||||||| ||||||||||| || || ||||| |||||||| || ||||||||| |
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| T |
42234449 |
gatgcatgtttggttccggttagttgtactcaagatgttcttgatttaatgaaaattggtcagaggaatcgtgctgttggtgctaccgctctaaatgagc |
42234350 |
T |
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| Q |
109 |
gaagcagccgttctcataggtaaaat |
134 |
Q |
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| T |
42234349 |
gaagcagtcgttctcataggtaaaat |
42234324 |
T |
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