View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465-Insertion-2 (Length: 704)
Name: NF4465-Insertion-2
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 682
Target Start/End: Original strand, 2131301 - 2131948
Alignment:
| Q |
7 |
agttgtctggttatggaaatacatgactcaattcaaaatattatagactctttttctaaactatcattaattcactagattcctctaaacatcgtaagct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||| |
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| T |
2131301 |
agttgtctggttatggaaatacatgactcaattcaaaatattatagactctttttctagactattagtaattcactagattcctctaaacatcctaagct |
2131400 |
T |
|
| Q |
107 |
aaaatgacnnnnnnnnnnctctttaaaacactaaaatacatgatatatgataaagagtcacgacaaccctaaacttaaagtatcgcttgtcctcaagtaa |
206 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
2131401 |
aaaatgacaaaaaaaaaactctttaaaacactaaaatacatgatatatgataaagagtcaccacaaccccatacttaaagtatcgcttgtcctcaagtaa |
2131500 |
T |
|
| Q |
207 |
ctaaaatagtcatacaattagtaaagtaacataaatttccaactacaatcattttatccgttcatttatataatccatttttacagtctcaaacggttat |
306 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2131501 |
ctaaa-tagccatacaattagtaaagtaacataaatttccaactacaatcattttatccgttcatttatataatcca--------------aacggttat |
2131585 |
T |
|
| Q |
307 |
tatcgtaatttcattgaaggtttttgtaagtgttgcctttgatcaattcgacccataaggaagaattgtttgtgtgggatggctagagtgaggagaactt |
406 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131586 |
tatcgtaaattcattgaaggtttttgtaagtgttgcctttgatcaattcgacccataaggaagaattgtttgtgtgggatggctagagtgaggagaactt |
2131685 |
T |
|
| Q |
407 |
ccaaaaacttaagagacgattaacttctgcaccgatcatagttacccgatccgagtaagccttttgtggttaatatcttgatttgttatggtggaggaga |
506 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2131686 |
ccaaaaacttaagagacgattaacttctgcaccga--------------tccgagtaagccttttgtggtttatatcttgatttgttatggtggaggaga |
2131771 |
T |
|
| Q |
507 |
aataacactattttcttgtggtatactcttagttttaaaagaaaagttataaaacagaaaaaattgtcctaaacaacttaagataattaataaatgacca |
606 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |
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| T |
2131772 |
aataacactattttcttgttgtatactcttagttttaaaagaaaagttataaaacagaaaaaattgtcataaaaaacttacgataattaataaatgacca |
2131871 |
T |
|
| Q |
607 |
tgacttc-atttccttaagagggtacttttactctttcacaggttttcccaaagtaatggatatgttttagattttg |
682 |
Q |
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||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||||| |||||| |
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| T |
2131872 |
tgacttcaatttccttaagaggttacttttactctttcacacgttttcccaaagtaatagatctgttttaaattttg |
2131948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 24750922 - 24750959
Alignment:
| Q |
169 |
acaaccctaaacttaaagtatcgcttgtcctcaagtaa |
206 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||| |
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| T |
24750922 |
acaaccctaaacttaaactattgcttgtcctcaagtaa |
24750959 |
T |
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