View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465-Insertion-5 (Length: 548)
Name: NF4465-Insertion-5
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Original strand, 309725 - 310264
Alignment:
| Q |
7 |
aaattatacatatgctttattgtgtacaacgaagacaacgcggttttaaccttaaaacctcatgcatgctacccaaatctctcacaactagagcaaccct |
106 |
Q |
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| T |
309725 |
aaattatacatatgttttattgtgtacaacgaagacaacgcggttttaaccttaaaacctcatgcatgctacccaaatctctcacaactagagcaatcct |
309824 |
T |
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| Q |
107 |
ggcagcttacaggttacatatacatatcacatgcaaaaataacatagattattagctaataataacggccatatgttgagtttatgctacaccaacatcg |
206 |
Q |
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| T |
309825 |
agcagcttacaggttacatatacatatcacatgcaaaaataaca--gattattagctaataataacggccatatgttgagtttatgctacaccaacatcg |
309922 |
T |
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| Q |
207 |
taagctttgactactctctaacnnnnnnntgatcaatgggtgtatgcttgccctccttgtgagacaacttttgcttcttggatttgctttgtctattgat |
306 |
Q |
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| T |
309923 |
taagctttgactactctctaacaaaaaaatgatcaatgggcgtatgcttgccctccttgtgagacaacttttgcttcttggatttgctttgtctattgat |
310022 |
T |
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| Q |
307 |
tcggtgcttatgaccctgactggaagaaacaagattaatcacataaaataccttaaacagaaaatgttaagtcacactcggtctaattcacatcccacta |
406 |
Q |
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| T |
310023 |
tcggtgcttctgaccctgactggaagaaacaagattaatcacataaaataccttaaacagaaaatgttaagtcatactcggtctaattcacatcccacta |
310122 |
T |
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| Q |
407 |
ttttgttgcaattgtaaaaaccacaacaaatggtaagaggtatatattttacctttgaatcggaacagatgcttggtgaatactagactcttccttttga |
506 |
Q |
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| T |
310123 |
ttttgttgcaattgtaaaaaccatgacaaatggtaagaggtatatattttacctttgaatcggaacagatgcttggtgaatactagactcttccttttga |
310222 |
T |
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| Q |
507 |
agcaattcagcaaaatggaaatcagaatgctctaatctttcc |
548 |
Q |
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| T |
310223 |
agcaattcagcaaaatggaaatcagagtgctctaatctttcc |
310264 |
T |
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