View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4465-Insertion-6 (Length: 543)
Name: NF4465-Insertion-6
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465-Insertion-6 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 119 - 543
Target Start/End: Original strand, 9867916 - 9868334
Alignment:
| Q |
119 |
acttgaatagatatataacactagcattaaaatcttacacattaccactaaattctcattgataaggtggtctagattttgggttaggatccaccgatct |
218 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867916 |
acttgaatagatatagaacactaccattaaaatcttacacattaccactaaattctcattgataaggtggtctagattttgggttaggatccaccgatct |
9868015 |
T |
|
| Q |
219 |
taactccttgcttttgatgttgnnnnnnnaataataaaataaagattgtacttcataataaaagcgtgaac-caatgtaatatttatgctttaagttcaa |
317 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9868016 |
taactcctagcatttgatgttgtttttttaataataaaataaagattgtatttcataattaaagcgtgaactaaatgtaatgtttatgctttaagttcaa |
9868115 |
T |
|
| Q |
318 |
agtattctttcttgtttggttccatgttcaaagtattctagcatcgttcttcttcgtgacatgtattgtttacataatccttcaatgggttttgtgagcc |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||| |||| |||||| |
|
|
| T |
9868116 |
agtattcttttttgtttggttccatgttcaaagtattctagcatcg---ttcttcgtgacatgtatcatttacataatctttcattggtttttatgagcc |
9868212 |
T |
|
| Q |
418 |
catatggtagtttatgagtccattcctatatttggtttggaatattgtctccttcactgtcagttgagtatgctagagacagatatcggccgcctaactt |
517 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
9868213 |
c--atggtagtttatgagtccattcc--tacttggtttggaatattgtctgcttcactgtcagttgactatgctagagacagacatcggctgcctaactt |
9868308 |
T |
|
| Q |
518 |
tagatttccgtagcctgtttttgttg |
543 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
9868309 |
tagatttccgtagcctgattttgttg |
9868334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 9846120 - 9846450
Alignment:
| Q |
20 |
ttagatgttattacctttatatgttattaatagatatagatagataaccatgcaaaaactcttccatatcttacacacactaatattaaattctcattta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846120 |
ttagatgttattacctttatatgttattaatagat----ttagataaccatgcaaaaactctcccatatcttacacacactaatattaaattctcattta |
9846215 |
T |
|
| Q |
120 |
cttgaatagatatataacactagcattaaaatcttacacattaccactaaattctcattgataaggtggtctagattttgggttaggatccaccgatctt |
219 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||| |
|
|
| T |
9846216 |
cttgaatagatatagcacattaccattaaaatcttacacattaccactaaat-----------------tctacattttggattgggatccaccgatctt |
9846298 |
T |
|
| Q |
220 |
aactccttgcttttgatgttg-----nnnnnnnaataataaaataaagattgtacttcataataaaagcgtgaaccaatgtaatatttatgctttaagtt |
314 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
9846299 |
aactcctagcttttgatgttgttttttttttaaaaaaataaaataaagattgtatttcataataaaagcgtgaaccaatgtagtgtttatgctttaagtt |
9846398 |
T |
|
| Q |
315 |
caaagtattc-tttcttgtttggttccatgttcaaagtattctagcatcgtt |
365 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846399 |
caaagtattctttttttgtttggttccatgttcaaagtattctagcatcgtt |
9846450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 9880836 - 9880921
Alignment:
| Q |
31 |
tacctttatatgttattaatagatatagatagataaccatgcaaaaactcttccatatcttacacacactaatattaaattctcatttac |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9880836 |
tacctttagatgttattaatagatatag----ataaccatgcaaaaactctcccatatcttacacacactaatattaaattctcatttac |
9880921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 16227041 - 16227098
Alignment:
| Q |
475 |
tgtcagttgagtatgctagagacagatatcggccgcctaactttagatttccgtagcc |
532 |
Q |
| |
|
|||||||||| | ||| ||||||| | || ||| |||||||||||||||||||||||| |
|
|
| T |
16227041 |
tgtcagttgattttgcaagagacatacatgggctgcctaactttagatttccgtagcc |
16227098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 541
Target Start/End: Complemental strand, 17072647 - 17072477
Alignment:
| Q |
368 |
tcttcgtgacatgtattgtttacataatccttcaatgggttttgtgagcccatatggtagtttatgagtccattcctatatttggtttggaatattgtct |
467 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||| || | ||||||||||| || |
|
|
| T |
17072647 |
tcttcgtgacatgtatcgtttacataatccttcattggtttttatgagcccat--ggtagtttatgagtccattcctac-ttggttttggaatattccct |
17072551 |
T |
|
| Q |
468 |
ccttcactgtcagttgagtatgctagagacagatatcggccgcctaactttagatttccgtagcctgtttttgt |
541 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| || ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
17072550 |
gcttcactgtcagttgattttgctagagacagacataggcttcctaactttagatttccgtagcttgtttttgt |
17072477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 14553391 - 14553337
Alignment:
| Q |
475 |
tgtcagttgagtatgctagagacagatatcggccgcctaactttagatttccgta |
529 |
Q |
| |
|
|||||||||| | ||| ||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
14553391 |
tgtcagttgattttgcaagagacagacatgggctgcctaactttagatttccgta |
14553337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 368 - 541
Target Start/End: Complemental strand, 11746023 - 11745853
Alignment:
| Q |
368 |
tcttcgtgacatgtattgtttacataatccttcaatgggttttgtgagcccatatggtagtttatgagtccattcctatatttggtttggaatattgtct |
467 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
11746023 |
tctttgtgacatgtatcgtttacataatccttcattggtttttatgagcc--tatggtagtttatgagtccattcctac-ttggttttggaatattgtct |
11745927 |
T |
|
| Q |
468 |
ccttcactgtcagttgagtatgctagagacagatatcggccgcctaactttagatttccgtagcctgtttttgt |
541 |
Q |
| |
|
|||||||||||||||| | || ||||||||| || ||| | ||||||||||||||| ||| ||||||||||| |
|
|
| T |
11745926 |
gcttcactgtcagttgattttgttagagacaggcatgggctgtctaactttagatttctgtatcctgtttttgt |
11745853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 499
Target Start/End: Complemental strand, 29682 - 29554
Alignment:
| Q |
368 |
tcttcgtgacatgtattgtttacataatccttcaatgggttttgtgagcccatatggtagtttatgagtccattcctatatttggtt-tggaatattgtc |
466 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||| |||| ||||||| |||||||||||||||||| ||| || |||||| |||||||||| | |
|
|
| T |
29682 |
tcttcgtgacatgtatcgtttacataattcttcattggtttttatgagccc--gtggtagtttatgagtccactcc--tacttggttatggaatattgcc |
29587 |
T |
|
| Q |
467 |
tccttcactgtcagttgagtatgctagagacag |
499 |
Q |
| |
|
| ||||||| |||||||| | ||| |||||||| |
|
|
| T |
29586 |
tgcttcactatcagttgattttgccagagacag |
29554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 499
Target Start/End: Complemental strand, 5785309 - 5785181
Alignment:
| Q |
368 |
tcttcgtgacatgtattgtttacataatccttcaatgggttttgtgagcccatatggtagtttatgagtccattcctatatttggtt-tggaatattgtc |
466 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||| |||| ||||||| |||||||||||||||||| ||| || |||||| |||||||||| | |
|
|
| T |
5785309 |
tcttcgtgacatgtatcgtttacataattcttcattggtttttatgagccc--gtggtagtttatgagtccactcc--tacttggttatggaatattgcc |
5785214 |
T |
|
| Q |
467 |
tccttcactgtcagttgagtatgctagagacag |
499 |
Q |
| |
|
| ||||||| |||||||| | ||| |||||||| |
|
|
| T |
5785213 |
tgcttcactatcagttgattttgccagagacag |
5785181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 19009519 - 19009580
Alignment:
| Q |
469 |
cttcactgtcagttgagtatgctagagacagatatcggccgcctaactttagatttccgtag |
530 |
Q |
| |
|
||||| |||||||||| | ||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
19009519 |
cttcattgtcagttgattttgctagagacagacatgggctacctaactttagatttccgtag |
19009580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University