View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465-Insertion-7 (Length: 514)
Name: NF4465-Insertion-7
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 25744255 - 25743864
Alignment:
| Q |
16 |
attggaaaaaccaccttggctcaatttgtttataatgatgaaaaagtgcagaaggaatttgatctcaaagcttggatttatgtgtctgagcagtttgatg |
115 |
Q |
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| T |
25744255 |
attggaaaaaccatcttagctcaatttgtttacaacgatgaaagagtgcagaaggaatttgatctcaaagcttggatttatgtgtctgagcagtttgata |
25744156 |
T |
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| Q |
116 |
ttctcaagattgcaaaaacccttgtggaagatatcacttcatgtagttgcagtattgaagagctgaatttactctagcatgatttgaagaaaaggttgtt |
215 |
Q |
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| T |
25744155 |
ttttcaagattacaaaaacccttgtggaagagatcacttcatgtagttgcagtattgaaaagttgaatttactccagcatgatttgaagaaaaggttgtt |
25744056 |
T |
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| Q |
216 |
aaagaaaaactttttattcattttagatgatgtatggaatcaaaactgcataagccgggaaactttgaagaatccatttgtgtatggtgctcctggaagt |
315 |
Q |
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| T |
25744055 |
aaagaaaaagtttttattcattttagatgatgtatggaatcaaaactacataagctgggaaactttgaagaatccatttgtgtatggtgctcctggaagt |
25743956 |
T |
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| Q |
316 |
aagattattgtaacaacaagaattgctcatgtggcatcaattatgcagactgttgagcctaattatctttcagaactgtgtgatgatgattg |
407 |
Q |
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| T |
25743955 |
aagattattgtaacaacaagaattgctcacgtggcatcaattatgcagactgttgagccttattatctttcagaactttgtgatgatgattg |
25743864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 403 - 514
Target Start/End: Complemental strand, 25743762 - 25743651
Alignment:
| Q |
403 |
gattgccatcggctgtgaagacacttgcaggacttctgagatctaaagatgatacaagggaatggtacaaagtactaaacagtgagatatgggatttgca |
502 |
Q |
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| T |
25743762 |
gattgcctttggccgtgaagacacttgcgggacttctgagatgtaaagatgatacaagggaatggtacaaagtactaaacagtgagatatgggatttgca |
25743663 |
T |
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| Q |
503 |
ggatgatgagag |
514 |
Q |
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| T |
25743662 |
gaatgatgagag |
25743651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 18085156 - 18085235
Alignment:
| Q |
16 |
attggaaaaaccaccttggctcaatttgtttataatgatgaaaaagtgcagaaggaatttgatctcaaagcttggattta |
95 |
Q |
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| T |
18085156 |
attggaaaaaccaccttagctcaactagtgtataatgatgatagagtacagaaggagtttgatctcaaagcttggattta |
18085235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 497
Target Start/End: Original strand, 18085658 - 18085752
Alignment:
| Q |
403 |
gattgccatcggctgtgaagacacttgcaggacttctgagatctaaagatgatacaagggaatggtacaaagtactaaacagtgagatatgggat |
497 |
Q |
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||||||| | |||| |||||||||||||||||||| ||||||| ||| ||||| |||||| | |||||||| |||||||||||||||||| |
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| T |
18085658 |
gattgcctttggctttgaagacacttgcaggacttttgagatcaaaaagtgatattcaagaatggcataaagtactgaacagtgagatatgggat |
18085752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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