View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465-Insertion-9 (Length: 434)
Name: NF4465-Insertion-9
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 15713350 - 15713776
Alignment:
| Q |
8 |
aacatcacaattaccaaactatgaaattgagaacacaaaaaacctatatgttcctcttagtattatcttttctacttgcagatgtatctgaatccatttc |
107 |
Q |
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| T |
15713350 |
aacatcacaattaccaaactatgaaattgagaacacaaaaaacctatatgtttctcttagtattatcttttctacttgcagatgtatctgaatccatttc |
15713449 |
T |
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| Q |
108 |
ttttgcaccagcaattggattaatagttagaagcagaattcctttctatcttaaacgcataacttcaagtaaattattttccagcatctggaataaactc |
207 |
Q |
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| T |
15713450 |
ttttgcaccagcaattggattaatagtcagaagtagaattcctttctatcttaaacgcataacttcaagtaaattattttccagcatctggaataaactc |
15713549 |
T |
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| Q |
208 |
aagtcaatcttcaacaacgctctaaagattggagacatagctagcggaatttccgatttgaaagattatttacaattctttggttacctgaactcttcga |
307 |
Q |
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| T |
15713550 |
aagtcaatcttcaacaacgctctaaagattggagacatagctagcggaatttccgatttgaaagaatatttacaattcttcggttacctaaactcttcaa |
15713649 |
T |
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| Q |
308 |
ctttgcattcaaatttcactgatgctttcacagaaaatcttcaatctgcaataatcgaatttcaaacaaatttcaatctcaatactacaggtaagattat |
407 |
Q |
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| T |
15713650 |
ctttgcattcaaatttcactgatgctttcacagaaaatcttcaatctgcaataatcgaatttcaaacaaatttcaatctcaatactacaggtaagattat |
15713749 |
T |
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| Q |
408 |
ttatatagtcaccagtccaatttttta |
434 |
Q |
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| T |
15713750 |
ttatatagtcaccagtccaatttttta |
15713776 |
T |
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