View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465_low_4 (Length: 255)
Name: NF4465_low_4
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 21924162 - 21924422
Alignment:
| Q |
1 |
tgtattttcagcattaagtcgtgaaataaatttggggattcaaaatacttatgtgctgctctattttccctacagcaagttattttcagtattaaaaggc |
100 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
21924162 |
tgtatgttcagcattaagttgtgaaataaatttggggattcaaaatacttatgtgctgctctattttttctgcagcaagtta-tttcagtattaaaagga |
21924260 |
T |
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| Q |
101 |
aagagtttgtgctaattcgagcagaaattgttttcgttcagagcagaaattattttcagacat-----------------attattcaacagtagcagat |
183 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| || ||| || | || |||||||| ||||||||||| |
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| T |
21924261 |
aagagtttgtactaattcgagcagaaattgttttcgttcagagcagttgttgtttgcaaagatgtttaggagtttcagacattattcagcagtagcagat |
21924360 |
T |
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| Q |
184 |
tactcttcgtgtatatcttgaacggtgcagccattttccccccaattttgtatcagtctctg |
245 |
Q |
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| T |
21924361 |
tactcttcgtgtatgtcttgaatggtgcagccattttccccccaattttgtatcagtctctg |
21924422 |
T |
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Back To:
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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 39483861 - 39483770
Alignment:
| Q |
154 |
tttcagacatattattcaacagtagcagattactcttcgtgtatatcttgaacggtgcagccattttccccccaattttgtatcagtctctg |
245 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39483861 |
tttcagacatattatttaacagtagcagattactcttcgtgtatatcttgaacggtgcagccattttccccccaattttgtatcagtctctg |
39483770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26844130 - 26844216
Alignment:
| Q |
1 |
tgtattttcagcattaagtcgtgaaataaatttggggattcaaaatacttatgtgctgctctattttccctacagcaagttattttca |
88 |
Q |
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||||||||||||| ||||||| || |||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
26844130 |
tgtattttcagcaa-aagtcgtaaactaaatttgaggattcaaaacacttatgtgctgctctattttccctgcagtaagttattttca |
26844216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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