View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4465_low_6 (Length: 239)
Name: NF4465_low_6
Description: NF4465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4465_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 39483939 - 39484159
Alignment:
| Q |
2 |
atatcagatacatctagatacagtagtttatcacctcaacaattgacataaatcccatcatacaatagctgcagcggtagactgaagtccagataacaat |
101 |
Q |
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| T |
39483939 |
atatcagatacatctagatacagtagtttatcacctcaacaattgacataaatcccatcatacaatagctgcaacagtagactgaagtccagataacaat |
39484038 |
T |
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| Q |
102 |
gacatccgaacacatgtgagaacaccgcgtagctaaattgatttttgcgccataagagaaaccaaatggggaaattctgtagaaaacaacgacattcgac |
201 |
Q |
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| T |
39484039 |
gacatccgaacacatgtgagaacaccgcgtagctaaattgatttttgcgccataagagaaaccaaatggggaaattctgtagaaaacaacgacattcgac |
39484138 |
T |
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| Q |
202 |
ctttgttcttcatggattaat |
222 |
Q |
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| T |
39484139 |
ctttgttcttcatggattaat |
39484159 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 6668836 - 6668785
Alignment:
| Q |
6 |
cagatacatctagatacagtagtttatcacctcaacaattgacataaatccc |
57 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
6668836 |
cagatacatctagatacatgagttcatcacctcaacaattgacataaatccc |
6668785 |
T |
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