View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4466-Insertion-1 (Length: 983)
Name: NF4466-Insertion-1
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466-Insertion-1 |
 | |
|
| [»] scaffold0406 (2 HSPs) |
| | |
|
| [»] scaffold0464 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 706; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 26 - 959
Target Start/End: Original strand, 22055325 - 22056247
Alignment:
| Q |
26 |
acatgttttgtccgtttccaacacgattggtaaaatatagtgtaggagctagtggtagagtggtttaatgttatcgacaagagaacacacactggtaatt |
125 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22055325 |
acatgttttgtcggtgtccaacacggttggtaaaatatagtgtcggagctagtggtagagtggtt-aatgttatcgacaagagaacaaacactggtaatt |
22055423 |
T |
|
| Q |
126 |
agctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgacgataattgcaccatttatgtctatt |
225 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||| |
|
|
| T |
22055424 |
agctccatgtatgaggaaataatataatatggtgaagccttcaatattatcgacattgcatctgaaaggcttgactacaattgcaccattccagtctatt |
22055523 |
T |
|
| Q |
226 |
tataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaat |
325 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055524 |
tataagtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaat |
22055623 |
T |
|
| Q |
326 |
ctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagag |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055624 |
ctagacattaattgaacaatctagaaacatttagcaaatttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagag |
22055723 |
T |
|
| Q |
426 |
atatgtatcaatttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacatgatatcatctcctcctgcattgat |
525 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22055724 |
atatgtatcaatttcaacactcctccttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacatgatatcatctcctcatgcattgat |
22055823 |
T |
|
| Q |
526 |
actcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggt |
625 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22055824 |
acttttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggt |
22055923 |
T |
|
| Q |
626 |
tatgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttggtgggttttgttaaagacatctaacaaggatcactctc |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
22055924 |
tatgttgaagacttatgtcatagaccattcttgctccttagtttctctagtaattttcctt-gttggttttgttaaagacatctaacaaggatcactctt |
22056022 |
T |
|
| Q |
726 |
gatgctttagtttggatggaatctctttgtcaatcttgttgaagatttctgatagggaggcattcatgcttcatagttgtttatggagtctccttatcac |
825 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22056023 |
gatgctttag-ttggatggaatctctttgtcgatcctgttgaagatttatgatagcga-gcattcatgcttcatagttgtttat-gagtctccttatcac |
22056119 |
T |
|
| Q |
826 |
tccttgcagaagaatcttgatatggactcactcttcctctagtggttacattttttcttcctaggcttggactccaagttgagcatcagagggcgcaagg |
925 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||| ||||| | |
|
|
| T |
22056120 |
t-cttgcagaagaatcttgatatggactcgctcttcctctagtggttaca-tttttcttcctaggcttgtact-caagttgagcatcaaaggtcgcaa-g |
22056215 |
T |
|
| Q |
926 |
tctccattttttatttattggcctgggcttgtgc |
959 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |
|
|
| T |
22056216 |
tctcc-ctttttatttatt-gcctgggcttgtgc |
22056247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 101 - 442
Target Start/End: Original strand, 22056480 - 22056815
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatc-gacattgcatctcaaaggcttga |
199 |
Q |
| |
|
|||||||| ||||| | | ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
22056480 |
gacaagaggacacatatttgtaattaactcattgtatgaggagagaatataatatggtgaagccttcaatagtatctgacattgcat-------gcttga |
22056572 |
T |
|
| Q |
200 |
cgataattgcaccatttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
299 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
22056573 |
atgcaattgcaccttttaagtctctttataggtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatca |
22056672 |
T |
|
| Q |
300 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaacttt-aagctattatagttttctctaatagacattgt |
398 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||||||||||| || || |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
22056673 |
tagatgtttttaggctacaaattaatctagacattaacagaacaatctagaaatatgaagtaactttaaagctattatagttttctctaatagacactgg |
22056772 |
T |
|
| Q |
399 |
catatttttaactatattattttagagatatgtatcaatttcaa |
442 |
Q |
| |
|
|||| ||||||||| |||| ||| || ||||||||||||||||| |
|
|
| T |
22056773 |
cata-ttttaactagattactttggaaatatgtatcaatttcaa |
22056815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 310 - 478
Target Start/End: Complemental strand, 29373123 - 29372957
Alignment:
| Q |
310 |
taggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaa |
409 |
Q |
| |
|
|||||||||| |||||||||| |||| | ||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
29373123 |
taggctacaacttaatctagatattagtagaacaatctagaaacatgtagcaactttaaactattctataattctctaatagacattgtcatatttttaa |
29373024 |
T |
|
| Q |
410 |
ctatattattttagagatatgtatcaatttcaacacccctatttaatgtatgtttcgaaaactccaaat |
478 |
Q |
| |
|
||| |||||| |||| | |||||||| |||||| | ||| |||||| || | ||||||||||||||| |
|
|
| T |
29373023 |
ctaaattattctagaaacatgtatca--ttcaactctcctccttaatgcatatgtcgaaaactccaaat |
29372957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 220 - 445
Target Start/End: Complemental strand, 29371948 - 29371712
Alignment:
| Q |
220 |
tctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta--------tagatgtttcta |
311 |
Q |
| |
|
|||||||||| ||||||||||||| || || |||| ||||||||||| |||||||||||||| |||||| ||||||| ||||||||| || |
|
|
| T |
29371948 |
tctatttataagtgcttgaagatgtttataatacttgaataatctagacttttgtttgccttttccacattacattattactagagtatagatgttttta |
29371849 |
T |
|
| Q |
312 |
ggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctatta----tagttttctctaatagacattgtcatattttt |
407 |
Q |
| |
|
| | ||| ||||||||||||||||| ||||||| | |||||| || |||| ||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
29371848 |
aggtgcaacttaatctagacattaatagaacaattaaaaaacatgtaacaacattaagctattatacttagtattctctaatagaaattgtcatattttt |
29371749 |
T |
|
| Q |
408 |
aactatattattttagagatatgtatcaatttcaacac |
445 |
Q |
| |
|
||||| | ||||||||| ||||||||| |||||||||| |
|
|
| T |
29371748 |
aacta-aatattttagaaatatgtatcgatttcaacac |
29371712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 101 - 444
Target Start/End: Original strand, 22622308 - 22622652
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
200 |
Q |
| |
|
|||||||| ||||| | || ||||||||| || || ||||||||||||| | ||||| | |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22622308 |
gacaagaggacacatattgtaaattagctcattctaggaggaaagaatatgaaatggtaatgcctacaatattattgacatggcatctcaaaggcttgaa |
22622407 |
T |
|
| Q |
201 |
gataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
299 |
Q |
| |
|
| ||||||||| || || | ||||||||| |||| |||||||| |||||| | |||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22622408 |
tacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatattg |
22622507 |
T |
|
| Q |
300 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtc |
399 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
22622508 |
tagatgtttttaggctacaatttaatctagatattaatagaacaatctagaaacatgtggcaactttaagctattatagttttttctaatagacattatc |
22622607 |
T |
|
| Q |
400 |
atatttttaactatattattttagagatatgtatcaatttcaaca |
444 |
Q |
| |
|
|| ||||||||| | |||| |||| ||||||||||||||||||| |
|
|
| T |
22622608 |
attattttaactagaatattctagaaatatgtatcaatttcaaca |
22622652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 2e-79; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 57 - 389
Target Start/End: Complemental strand, 24853555 - 24853222
Alignment:
| Q |
57 |
aaaatatagtgtaggagctagtggtagagtggtttaatgttatcg-acaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatat |
155 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| | || | ||||||| ||||| | ||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
24853555 |
aaaatatagtgtaggagctagtggtggagtg-tttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaatatgatat |
24853457 |
T |
|
| Q |
156 |
ggtgaagccttcaatattatcgacattgcatctcaaaggcttgacgataattgca-ccatttatgtctatttataggtgcttgaagatgattctagtact |
254 |
Q |
| |
|
| |||||||||||||||||| |||||||||||| |||||||||| | ||||||| ||| || ||||||||||||||| | ||||||| || ||| ||| |
|
|
| T |
24853456 |
gatgaagccttcaatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaact |
24853357 |
T |
|
| Q |
255 |
agaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaaca |
354 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| || | |||||| |||||||||||||||| |
|
|
| T |
24853356 |
agaataatttaggcctttgtttgccttttctacattagattattatagatgtttcttggctataacttaatttatatattaatagaacaatctagaaaca |
24853257 |
T |
|
| Q |
355 |
tttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
||||| ||||||| | |||| |||||||||||||| |
|
|
| T |
24853256 |
tttagaaactttatgttattctagttttctctaat |
24853222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 57 - 444
Target Start/End: Complemental strand, 28787220 - 28786832
Alignment:
| Q |
57 |
aaaatatagtgtaggagctagtggtagagtggtttaatgttatcga-caagagaacacacactggtaattagctcgttgtatgaggaaagaatataatat |
155 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | | || || |||||| ||||||| | ||||||| ||| || || ||||| | ||||| |||| |
|
|
| T |
28787220 |
aaaatatagtgtaggagctaatggtagagtggtt-agtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgatat |
28787122 |
T |
|
| Q |
156 |
ggtg---aagccttcaatattatcgacattgcatctcaaaggcttgacgataattgcaccatt-tatgtctatttataggtgcttgaagatgattctagt |
251 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |||||||||| | |||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
28787121 |
ggtggtgaagccttcaatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctaga |
28787022 |
T |
|
| Q |
252 |
actagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaa |
351 |
Q |
| |
|
|||| ||||| |||| |||||| | |||||| ||||| |||| |||||||||||||||||||||||| |||||| |||||||||| |||||| ||||| |
|
|
| T |
28787021 |
acta--ataatttaggcctttgtattccttttctacataagataattatagatgtttctaggctacaacttaatcgagacattaatataacaatttagaa |
28786924 |
T |
|
| Q |
352 |
acatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatttcaaca |
444 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||| | |||||||| |||||||| | ||||||||| |||| |||||||||||||| |
|
|
| T |
28786923 |
acatgtagcaactttaagttattctagttttctctaata-aaattgtcattaatttaactagaatattttagaaatatatatcaatttcaaca |
28786832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 101 - 389
Target Start/End: Complemental strand, 51246787 - 51246498
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
200 |
Q |
| |
|
|||||||| ||||||| | | ||||||||| ||||| ||||| ||||||| || ||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
51246787 |
gacaagaggacacacattaggaattagctcattgtaggaggagagaatatgatttggtgaagccttcaatattattgacattacatcccaaaggcttgaa |
51246688 |
T |
|
| Q |
201 |
gataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
299 |
Q |
| |
|
| ||||||||| || || ||||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||| | |||| ||||||||| |
|
|
| T |
51246687 |
tacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattatta |
51246588 |
T |
|
| Q |
300 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||| || |||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
51246587 |
tagatgtttctaggctttaacttaacctagacattaatagagcaatctagaaacatctagcaactttgtattattctagttttctctaat |
51246498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 122 - 389
Target Start/End: Original strand, 17525443 - 17525713
Alignment:
| Q |
122 |
aattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgaca--ttgcatctcaaaggcttgacgataattgcac-catttat |
218 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | |||| ||| ||| || |
|
|
| T |
17525443 |
aattagctcattgtaggaggagagaatatgatatggtgaagccttcaatattattgacacattgcatctcaaaggcttgaatacaatttcacacatataa |
17525542 |
T |
|
| Q |
219 |
gtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctaca |
318 |
Q |
| |
|
||||||||||| | ||||| ||||| |||||| |||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||| | |
|
|
| T |
17525543 |
gtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattattatagatgtttctaggcttta |
17525642 |
T |
|
| Q |
319 |
atttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
| |||| |||||||||||| ||| |||| |||||||| ||||||||||| | || | ||| |||||||||| |
|
|
| T |
17525643 |
acttaacctagacattaatagaataatcaagaaacatgtagcaactttatgttaatctagctttctctaat |
17525713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 168 - 337
Target Start/End: Complemental strand, 28788058 - 28787888
Alignment:
| Q |
168 |
aatattatcgacattgcatctcaaaggcttgacgataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctag |
266 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| | ||||||||| || |||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
28788058 |
aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctag |
28787959 |
T |
|
| Q |
267 |
gtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacattaat |
337 |
Q |
| |
|
| |||||||| |||||| |||||||||| ||||||||| |||||||||||||| |||||| ||||| |||| |
|
|
| T |
28787958 |
gcctttgttttccttttgtacattagataattatagatatttctaggctacaacttaatcgagacaataat |
28787888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 101 - 389
Target Start/End: Complemental strand, 24856402 - 24856122
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
200 |
Q |
| |
|
||||||| ||||| | ||||||||||||| ||||| ||||| ||||||| |||||||||| | ||||||||||| |||||||||||| ||||||| || |
|
|
| T |
24856402 |
gacaagatgacacatattggtaattagctcattgtaggaggagagaatatgatatggtgaaactttcaatattattgacattgcatcttaaaggctggaa |
24856303 |
T |
|
| Q |
201 |
gataattgca-ccatttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
299 |
Q |
| |
|
| ||||||| || || ||||||||||||||| | ||| ||| |||||| |||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
24856302 |
tacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctaggcctttgtttgcctttcctacatta-att---- |
24856208 |
T |
|
| Q |
300 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
||||| |||||| || |||| |||||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||| |
|
|
| T |
24856207 |
----tgtttataggctttaacttaaactagacattaatagaacaatctagaaacatgtagcaactttaagttattctagatttctctaat |
24856122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 462 - 935
Target Start/End: Original strand, 6824128 - 6824601
Alignment:
| Q |
462 |
tttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatactcttcatagttgatcaattttacaag |
553 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| | |
|
|
| T |
6824128 |
tttcgaaaacttcaaatgtagtacgtagttgctcaaacatagatttgtgttatcatctcctcctgcattgaaactcttcatagttgatcaatttgacagg |
6824227 |
T |
|
| Q |
554 |
tgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggttatgttgaagacttatgtcatagaccat |
653 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||| ||||||||||||| |||| || |||| |||| ||| |||||||||||| || ||| |||||| |
|
|
| T |
6824228 |
tgttagctccaccatgatagagaatttgtgccacctcttgccataatatttgttattgatctccttgtcggtcttgttgaagacttctg-catggaccat |
6824326 |
T |
|
| Q |
654 |
tcttgccccttagtttctctagtaattttccttggtgggttttgttaaagacatctaacaaggatcactctcgatgctttagtttggatg-gaatctctt |
752 |
Q |
| |
|
| || | |||||| | ||| ||||||||||||| || || ||||||||||||||| ||||||| |||| | ||| |||| ||| ||| ||||||| | |
|
|
| T |
6824327 |
tttttctccttaggtactccagtaattttcctt-gttagtcttgttaaagacatctgacaaggaccacttatgttgc-ttag-ttgcatgtgaatctcct |
6824423 |
T |
|
| Q |
753 |
tgtcaatcttgttgaagatttctgatagggaggcattcatgcttcatagttgtttatggagtctccttatcactccttgcagaagaatcttgatatggac |
852 |
Q |
| |
|
|||| | ||||||||||||| ||| ||||| |||||| ||||||||||||| || | ||||| |||| ||||| | || || ||| |||||| | ||| |
|
|
| T |
6824424 |
tgtcgacattgttgaagatttatgacaggga-gcattcctgcttcatagttgcttgt-gagtccccttgtcact-catgtagtagattcttgacagagac |
6824520 |
T |
|
| Q |
853 |
tcactcttcctc-tagtggttacattttttcttcctaggcttggactccaagttgagcatcagagggcgcaaggtctccatttt |
935 |
Q |
| |
|
||| |||| ||| |||| |||||| |||||||||||||||||| ||| ||||||| ||||||||| || ||||||||||||| |
|
|
| T |
6824521 |
tcattctttctcttagtagttaca-tttttcttcctaggcttgtact-gaagttgatcatcagaggtcg-taggtctccatttt |
6824601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 436 - 722
Target Start/End: Original strand, 17525746 - 17526031
Alignment:
| Q |
436 |
atttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatac |
527 |
Q |
| |
|
|||||||||| ||| || ||| || ||||||||||| ||||| |||||| |||| |||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
17525746 |
atttcaacactcctccttgatgcatatttcgaaaacttcaaatgtagtacgtagttgctcaaacatagattttcgctatcatctcctcttgcattgatac |
17525845 |
T |
|
| Q |
528 |
tcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggtta |
627 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| ||||||||| ||| ||||||||||||| |||| || ||||| ||| || | |
|
|
| T |
17525846 |
tcttcatagttgatcaatttgacaggtgttacc------atgataggaaatttgtgccacctcttgccataatatttgttattggtctccttg-tgatct |
17525938 |
T |
|
| Q |
628 |
tgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttggtgggttttgttaaagacatctaacaaggatcact |
722 |
Q |
| |
|
|||||||||||| || ||| |||||||||||| |||||| | ||||||||||||| ||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
17525939 |
tgttgaagacttctg-catggaccattcttgctccttaggtactctagtaatttttctt-gttggtcttgttaaagacatctaacaaggatcact |
17526031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 421 - 722
Target Start/End: Complemental strand, 28787856 - 28787545
Alignment:
| Q |
421 |
tagagatatgtatcaatttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctc |
512 |
Q |
| |
|
|||| |||||||||||||||||||| ||| || ||| || |||| |||||||||| | |||||| |||| |||| ||||| ||||||||||| |
|
|
| T |
28787856 |
tagaaatatgtatcaatttcaacactcctccttgatgcat-tttcaaaaactccaattgtagtacctagttgctcgaacatagatttgtgatatcatctc |
28787758 |
T |
|
| Q |
513 |
ctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttg |
612 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||| ||||||| || || || | |||||||||||||||| ||||||||||||| |||| || | |
|
|
| T |
28787757 |
ct---gcattgatactcttcatagttgatcaatttgacaggtgttacatccactataacagtaaatttgtgtcacctcttgccataatatttgttattgg |
28787661 |
T |
|
| Q |
613 |
tctctttgttggtt-------atgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttggtgggttttgttaaagac |
705 |
Q |
| |
|
|||| |||| |||| |||||||||||| || ||| ||||||||| | |||||||| ||||||||| |||||| || ||| || |||||| | |
|
|
| T |
28787660 |
tctccttgtcggttgtcggtcttgttgaagacttttgacatgtaccattcttcctccttagttggtctagtaatgttcctt-gttggtatttttaaaggc |
28787562 |
T |
|
| Q |
706 |
atctaacaaggatcact |
722 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
28787561 |
atttaacaaggaacact |
28787545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 589 - 945
Target Start/End: Complemental strand, 24854213 - 24853866
Alignment:
| Q |
589 |
tcttgccataatacttgtcgtttgtctctttgttggttatgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttgg |
688 |
Q |
| |
|
||||||| ||||| |||| || ||||||||| ||| |||||||||||| | ||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
24854213 |
tcttgccgtaatatttgttattggtctctttgccggtcttgttgaagacttcta-catggaccattcttgctccttaggcactctagtaattttccttgt |
24854115 |
T |
|
| Q |
689 |
tgggttttgttaaagacatctaacaaggatcactctcga-tgctttagtttggatg-gaatctctttgtcaatcttgttgaagatttctgatagggaggc |
786 |
Q |
| |
|
| | | ||||||||||||||||||||||| |||| || | ||||| |||| | ||| ||||||| ||||| | ||||||||||||||| | |||||| | |
|
|
| T |
24854114 |
tcg-tcttgttaaagacatctaacaaggaccact-tctactgctt-agtt-gcatgtgaatctccttgtcgacattgttgaagatttctaacagggag-c |
24854020 |
T |
|
| Q |
787 |
attcatgcttcatagttgtttatggagtctccttatcactccttgcagaagaatcttgatatggactcactcttcctct-agtggttacattttttcttc |
885 |
Q |
| |
|
|||| ||||||||||||| || || ||||||||| |||||| | | || ||| |||||| | ||||||| |||| |||| ||| ||||||||||| |||| |
|
|
| T |
24854019 |
attcctgcttcatagttgcttgtg-agtctccttgtcactcat-gtagtagattcttgacagggactcattcttgctcttagtagttacattttt-cttc |
24853923 |
T |
|
| Q |
886 |
ctaggcttggactccaagttgagcatcagagggcgcaaggtctccattttttatttattg |
945 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
24853922 |
ataggcttgtactt-aagttgagcatcagaggtcgcaa-gtctcca-tttttatttattg |
24853866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 5e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 132 - 599
Target Start/End: Original strand, 1275163 - 1275635
Alignment:
| Q |
132 |
ttgtatgaggaaagaatataatatggtgaagccttc--aatattatcgacattgcatctcaaaggcttgacgataattgcacc-atttatgtctatttat |
228 |
Q |
| |
|
||||||||| | |||| || || |||||||||||| |||||||| |||||||||||| ||| | |||| | ||||||||| || || | || |||| |
|
|
| T |
1275163 |
ttgtatgagaagagaacatgatttggtgaagcctttttaatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttat |
1275262 |
T |
|
| Q |
229 |
aggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatcta |
328 |
Q |
| |
|
|||||||||||| || |||||| |||||| | ||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||| || ||||| || |
|
|
| T |
1275263 |
aggtgcttgaaggtgtttctagaactagatt---ctaggcctttgtttgccatttctacattagattattatagatgtttctaagctataacttaattta |
1275359 |
T |
|
| Q |
329 |
gacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagata |
428 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||||| || |||| |||||||||||||||||| | || ||| ||||||| | ||| |||| ||| |
|
|
| T |
1275360 |
tacattaataaaataatctagaaacatgtagcaactttgagttattctagttttctctaatagacgtcgttata---ttaactagaaaattctagaaata |
1275456 |
T |
|
| Q |
429 |
tgtatcaatttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaaca--------tgatatcatctcctcctgca |
520 |
Q |
| |
|
||||||||||||||||| ||| || ||| || |||| ||||||||||| || | | |||| ||||||||| ||||||||||| |||| || |
|
|
| T |
1275457 |
tgtatcaatttcaacactcctccttgatgcatatttcagaaactccaaatgtaatgcgtagttgctcaaacatagatttgtgatatcatcttttcctaca |
1275556 |
T |
|
| Q |
521 |
ttgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataa |
599 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||| |||||||| || |||||| |||| |
|
|
| T |
1275557 |
ttgatactcttcatagttgattaatttgacaagtcttacctccaccatgatagtacatttgtgttacctcttgctataa |
1275635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 101 - 389
Target Start/End: Complemental strand, 6445 - 6156
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgac |
200 |
Q |
| |
|
||||||| ||||||| | | ||||||||| || || ||||| | ||||| || | ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6445 |
gacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacattgcatctcaaaggcttgaa |
6346 |
T |
|
| Q |
201 |
gataattgcacc-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattatta |
299 |
Q |
| |
|
| |||| |||| || || |||||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||| | | || ||||||||| |
|
|
| T |
6345 |
tacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttgtttgccttatctgcacaagattatta |
6246 |
T |
|
| Q |
300 |
tagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
6245 |
tagatgtttctaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttttctctaat |
6156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 436 - 722
Target Start/End: Complemental strand, 6123 - 5834
Alignment:
| Q |
436 |
atttcaacacccctatttaatgtatgtttcgaaaactccaaatctagtacatagtagctcaaacat--------gatatcatctcctcctgcattgatac |
527 |
Q |
| |
|
|||||||||| ||| || ||| || ||||||||||| ||||| |||||| |||| |||||||||| | ||||||| ||||||||||||| || |
|
|
| T |
6123 |
atttcaacactcctccttgatgcatatttcgaaaacttcaaatgtagtacttagttgctcaaacatagatttgtgctatcatcccctcctgcattgaaac |
6024 |
T |
|
| Q |
528 |
tcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgtcgtttgtctctttgttggtta |
627 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||| |||||||||| ||||||||| || | ||||||||||| |||| || |||| |||| || |
|
|
| T |
6023 |
tcttcgtagttgatcaatttgacaggtgttacctccaccatgatagaaaatttgtgacatctattgccataatatttgttattggtcttcttgtcgg--- |
5927 |
T |
|
| Q |
628 |
tgttgaagacttatgtcatagaccattcttgccccttagtttctctagtaattttccttggtgggttttgttaaagacatctaacaaggatcact |
722 |
Q |
| |
|
| |||||||||| || |||||||||||| ||| |||||| | |||| |||||||||||| || ||| ||||||||||||||||||||||| |||| |
|
|
| T |
5926 |
tcttgaagacttctg-catagaccattcatgctccttaggtactcttgtaattttcctt-gttggtcttgttaaagacatctaacaaggaccact |
5834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 4e-56; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 220 - 606
Target Start/End: Original strand, 5663802 - 5664195
Alignment:
| Q |
220 |
tctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaa |
319 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||| ||||||| | |||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663802 |
tctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctacaa |
5663901 |
T |
|
| Q |
320 |
tttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat-agacattgtcatatttttaactatattat |
418 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||| |||||||||||||||| | ||| ||||||| || |||||||||||| |||||||||| | ||| |
|
|
| T |
5663902 |
tttaatttagacattaatagaacaatcta-aaacatgtagcaactttaagctactctag-tttctctgatcagacattgtcat-tttttaactagaatat |
5663998 |
T |
|
| Q |
419 |
tttagagatatgtatcaatttcaacacccctatttaatgtatgtttcgaaaactcca----aatctagtacatagtagctcaaaca--------tgatat |
506 |
Q |
| |
|
| || | ||||||||||||||||| || | | || ||| | |||| ||||||||| ||| ||||| |||| |||||| || |||||| |
|
|
| T |
5663999 |
tctaaaaatatgtatcaatttcaaaactcatccttgatgcacatttcaaaaactccaaattaatgtagtatgtagttgctcaatcatagatttttgatat |
5664098 |
T |
|
| Q |
507 |
catctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtgtcacatcttgccataatacttgt |
606 |
Q |
| |
|
||||| || ||||||| || || || |||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
5664099 |
catcttgtcatgcattg---ctttttatggttgatcaatttgacaagtgttacctccaccgtgatagtaaatttgtgtcacttcttgtcataatatttgt |
5664195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 101 - 389
Target Start/End: Complemental strand, 5046621 - 5046324
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaa--------a |
192 |
Q |
| |
|
||||| || |||| || |||||| |||||| ||||| ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
5046621 |
gacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatatgatatggtgaagcctctaatattattgacattgcatctcaatggcttaaa |
5046522 |
T |
|
| Q |
193 |
ggcttgacgataattgcac-catttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacatta |
291 |
Q |
| |
|
||||||| | |||||||| ||| || ||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| | |||| | |
|
|
| T |
5046521 |
ggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctacacaa |
5046422 |
T |
|
| Q |
292 |
gattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||||||||| ||||||||| |||||| |||||||||| | |||| |||||||||||||| |
|
|
| T |
5046421 |
gattattatagatgtttctaggctttaacttaacctagacattaataaaacaatctataaacatgaagcaactttatgttattctagttttctctaat |
5046324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 101 - 389
Target Start/End: Complemental strand, 5047392 - 5047095
Alignment:
| Q |
101 |
gacaagagaacacacactggtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaa--------a |
192 |
Q |
| |
|
||||| || |||| || |||||| |||||| ||||| ||||| ||||||| |||||||||||||| |||||||| |||||||||| |||| | |
|
|
| T |
5047392 |
gacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatatgatatggtgaagcctctaatattattgacattgcatttcaatggcttaaa |
5047293 |
T |
|
| Q |
193 |
ggcttgacgataattgcac-catttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacatta |
291 |
Q |
| |
|
||||||| | |||||||| ||| || || |||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||| | || | | |
|
|
| T |
5047292 |
ggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctagacaa |
5047193 |
T |
|
| Q |
292 |
gattattatagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
|||||||||||||| ||| ||||| || |||| |||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
5047192 |
gattattatagatggttcaaggctttaacttaacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttttctctaat |
5047095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 132 - 389
Target Start/End: Complemental strand, 5048132 - 5047866
Alignment:
| Q |
132 |
ttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaa--------aggcttgacgataattgcac-catttatgtct |
222 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| |||||||| |||||||||||| || |||||||| | |||||||| ||| || || | |
|
|
| T |
5048132 |
ttgtaggaggagagaatatgatatggtgaagcctctaatattattgacattgcatcttaatggcttaaaggcttgaatacaattgcactcatataagtat |
5048033 |
T |
|
| Q |
223 |
atttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaattt |
322 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||||||||||| ||||||||||||| | |||| ||||||||||||||| ||| ||||| || || |
|
|
| T |
5048032 |
atttataggtgcttgtagatgtttttaaaactagaataatctaggcctttgtttgccttatctacacaagattattatagatggttcaaggctttaactt |
5047933 |
T |
|
| Q |
323 |
aatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
5047932 |
aacctagacattaatagaacaatctcgaaacatgtagcaactttatgttattctagttttctctaat |
5047866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 504 - 578
Target Start/End: Complemental strand, 5047757 - 5047683
Alignment:
| Q |
504 |
tatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaat |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| |
|
|
| T |
5047757 |
tatcatctcctcctgcattgatactcttcatagttgatcaatttgacaggtgttacctccaccatgatagaaaat |
5047683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 504 - 578
Target Start/End: Complemental strand, 5046986 - 5046912
Alignment:
| Q |
504 |
tatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaat |
578 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| |
|
|
| T |
5046986 |
tatcatatccttctgcattgatactcttcatagttgatcaatttgacaggtgttacctccaccatgatagaaaat |
5046912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 15063226 - 15063186
Alignment:
| Q |
144 |
agaatataatatggtgaagccttcaatattatcgacattgc |
184 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
15063226 |
agaatatgatatggtgaagccttcaatattattgacattgc |
15063186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 143 - 389
Target Start/End: Complemental strand, 12739473 - 12739218
Alignment:
| Q |
143 |
aagaatataatatggtgaagccttcaatattatcgacattgcatctcaaaggcttgacg--------ataattgca-ccatttatgtctatttataggtg |
233 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |||||||||||||||||||| | | | ||||||| ||| || ||||||||||| || |
|
|
| T |
12739473 |
aagaatatgatttggtgaagccttcaatattattaacattgcatctcaaaggcttaaaggcttgaatacaattgcatccaaataattctatttatagatg |
12739374 |
T |
|
| Q |
234 |
cttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatttaatctagacat |
333 |
Q |
| |
|
|||| ||||| |||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| || |||| ||||| || |
|
|
| T |
12739373 |
cttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctacacaagattattatagatgtttctaggctgtaacttaacctagatat |
12739274 |
T |
|
| Q |
334 |
taattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| | |||| || ||||||||||| |
|
|
| T |
12739273 |
taatagaacaatctagaaacatgtagcaactttatgttattctaattttctctaat |
12739218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 120 - 385
Target Start/End: Complemental strand, 12738345 - 12738071
Alignment:
| Q |
120 |
gtaattagctcgttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaa--------ggcttgacgataattgcac |
211 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||||| || ||||||||||||||||||||| | ||||||||||||| ||||||| | |||||||| |
|
|
| T |
12738345 |
gtaataagctcattgtaggagaagagaatatgatttggtgaagccttcaatattatttagattgcatctcaaaagcttaaaggcttgaatacaattgcac |
12738246 |
T |
|
| Q |
212 |
c-atttatgtctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttct |
310 |
Q |
| |
|
| | || || |||||||||||||||| ||||| |||||| |||| ||| ||||||| |||||||||||||| |||| |||| ||||| ||||||||| |
|
|
| T |
12738245 |
ccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctacacaagataattattgatgtttct |
12738146 |
T |
|
| Q |
311 |
aggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctc |
385 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||||| |||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
12738145 |
aggctttaccttaatctagacattaatagaacaatctacaaacatgtagcaactttatgttattttagttttctc |
12738071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 221 - 389
Target Start/End: Complemental strand, 15023103 - 15022936
Alignment:
| Q |
221 |
ctatttataggtgcttgaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaat |
320 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| ||||||||||| |||||||||||| | |||| |||||||||||||||||| ||| || || |
|
|
| T |
15023103 |
ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctacacaagattattatagatgtttttagactttaac |
15023004 |
T |
|
| Q |
321 |
ttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
| || ||| |||||||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||| |
|
|
| T |
15023003 |
tgaacctaaacattaatagaacaatctagaaacatatagc-actttatgttattctagttttctctaat |
15022936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 299 - 444
Target Start/End: Complemental strand, 1896865 - 1896721
Alignment:
| Q |
299 |
atagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgt |
398 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| ||| ||||||| || |||||| | |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1896865 |
atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagtttt-tctaatagacattgt |
1896767 |
T |
|
| Q |
399 |
catatttttaactatattattttagagatatgtatcaatttcaaca |
444 |
Q |
| |
|
||| |||| ||||| | |||| |||| |||| |||| ||||||||| |
|
|
| T |
1896766 |
cattttttaaactagaatattctagaaatatttatctatttcaaca |
1896721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 299 - 444
Target Start/End: Complemental strand, 1906311 - 1906167
Alignment:
| Q |
299 |
atagatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaatagacattgt |
398 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| ||| ||||||| || |||||| | |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1906311 |
atagatgtttctaggctacaacttaacctagtcatcaatagaacaatatataaacatgtggcaactttaagctattctagtttt-tctaatagacattgt |
1906213 |
T |
|
| Q |
399 |
catatttttaactatattattttagagatatgtatcaatttcaaca |
444 |
Q |
| |
|
||| |||| ||||| | |||| |||| |||| |||| ||||||||| |
|
|
| T |
1906212 |
cattttttaaactagaatattctagaaatatttatctatttcaaca |
1906167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 648 - 935
Target Start/End: Complemental strand, 12739010 - 12738728
Alignment:
| Q |
648 |
gaccattcttgccccttagtttctctagtaattttccttggtgggttttgttaaagacatctaacaaggatcactctcgatgctttagtttggatg-gaa |
746 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||| || ||| ||||||| |||||||||||||||||||||| | ||||| | ||| ||| ||| |
|
|
| T |
12739010 |
gaccattctttctccttagttgctctagtaattttcctt-gttggtcttgttaaggacatctaacaaggatcactctggctgctt--ggttgcatgtgaa |
12738914 |
T |
|
| Q |
747 |
tctctttgtcaatcttgttg-aagatttctgatagggaggcattcatgcttcatagttgtttatggagtctccttatcactccttgcagaagaatcttga |
845 |
Q |
| |
|
|||| ||||| || |||||| || |||||||| ||||| ||||||||||||||||||||| | |||||||||| ||||| | || || ||| || ||| |
|
|
| T |
12738913 |
tctccttgtcgatattgttgaaaaatttctgacaggga-aaattcatgcttcatagttgtttgt-gagtctccttgtcact-catgtagtagattcctga |
12738817 |
T |
|
| Q |
846 |
tatggactcactcttcctctagtggttacattttttcttcctaggcttggactcca-agttgagcatcagagggcgcaaggtctccatttt |
935 |
Q |
| |
|
|| ||| ||| |||| ||||||| |||||| |||||||| ||| | ||| |||| | |||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
12738816 |
tagggattcattcttgctctagtagttaca-tttttctttctaagattgtactcaacagttgagcgtcagaggtcgc-aggtctccatttt |
12738728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 2932826 - 2932912
Alignment:
| Q |
357 |
tagcaactttaagctattatagttttctctaatagacattgtca-tatttttaactatattattttagagatatgtatcaatttcaa |
442 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||| | |||| |||| ||||||||||||||||| |
|
|
| T |
2932826 |
tagcaactttaagctattctagttttttctaatagacattgtcattttttttaactagaatattctagaaatatgtatcaatttcaa |
2932912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 347 - 438
Target Start/End: Complemental strand, 1888751 - 1888660
Alignment:
| Q |
347 |
tagaaacatttagcaactttaagctattatagttttctctaatagacattgtcatatttttaactatattattttagagatatgtatcaatt |
438 |
Q |
| |
|
||||||||| |||||||||| ||||||| | ||||| |||||||||||||||||| |||||||||| | |||| |||| ||||| ||||||| |
|
|
| T |
1888751 |
tagaaacatgtagcaacttttagctattcttgttttttctaatagacattgtcatttttttaactagaatattctagaaatatgcatcaatt |
1888660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 12737509 - 12737445
Alignment:
| Q |
321 |
ttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctc |
385 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
12737509 |
ttaatctagacattaatagaacaatctacaaacatgtagcaactttatgttattttagttttctc |
12737445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 501 - 583
Target Start/End: Complemental strand, 12739112 - 12739032
Alignment:
| Q |
501 |
tgatatcatctcctcctgcattgatactcttcatagttgatcaattttacaagtgttacctctaccatgatagtaaatttgtg |
583 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||||| ||| |||||| || ||| |||||| ||||||||| |
|
|
| T |
12739112 |
tgatatcagctcctcctgcattgatactctttatagatgatcaatttgaca--tgttacatccaccgtgatagaaaatttgtg |
12739032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 132 - 389
Target Start/End: Original strand, 20978797 - 20979064
Alignment:
| Q |
132 |
ttgtatgaggaaagaatataatatggtgaagccttcaatattatcgacattgcatctcaaagg--------cttgacgataattgcacc-atttatgtct |
222 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| || || || | |
|
|
| T |
20978797 |
ttgtaggaggagagaatatgatatggtgaagccttcaatattattgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt |
20978896 |
T |
|
| Q |
223 |
atttataggtgctt-gaagatgattctagtactagaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaatt |
321 |
Q |
| |
|
|||||||||| ||| | ||||| |||||| |||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||||||| || | |
|
|
| T |
20978897 |
atttataggtactttgtagatgtttctagaactagaataatctatacctttgtttgccttatctacacaatattattatagatgtttctaggctttaact |
20978996 |
T |
|
| Q |
322 |
taatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctctaat |
389 |
Q |
| |
|
||| ||| |||| ||| ||||||||||||||||| ||| | ||||| | |||| || ||||||||||| |
|
|
| T |
20978997 |
taacctaaacatgaatagaacaatctagaaacatgtagaacctttatgttattctaattttctctaat |
20979064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 917
Target Start/End: Original strand, 19261387 - 19261554
Alignment:
| Q |
746 |
atctctttgtcaatcttgttgaagatttctgatagggaggcattcatgcttcatagttgtttatggagtctccttatcactccttgcagaagaatcttga |
845 |
Q |
| |
|
||||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || | |||||||||| | | ||||| |||||||||| |
|
|
| T |
19261387 |
atctcattgtcgatcttgttgaagatttctaaaaggga-gcacccttgcttcatagttgcttgt-gagtctccttgttgc-ccttgtagaagaatctgtc |
19261483 |
T |
|
| Q |
846 |
tatggactcactcttcctctagtggttacattttttcttcctaggcttggactccaagttgagcatcagagg |
917 |
Q |
| |
|
|| |||| ||||||||| |||| ||| ||| ||||||||| | |||| ||| |||||||||||||||||| |
|
|
| T |
19261484 |
cattgactaactcttcctttagtagttgcatattttcttcccatgcttctact-caagttgagcatcagagg |
19261554 |
T |
|
Back To:
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Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 4592 - 4675
Alignment:
| Q |
302 |
gatgtttctaggctacaatttaatctagacattaattgaacaatctagaaacatttagcaactttaagctattatagttttctc |
385 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| |||||||||||||||| ||| ||||||| | |||| |||||||||| |
|
|
| T |
4592 |
gatgtttctaggcttgaacttaacctagacattaacaaaacaatctagaaacatgtagtaactttatgttattttagttttctc |
4675 |
T |
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