View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4466-Insertion-2 (Length: 842)

Name: NF4466-Insertion-2
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4466-Insertion-2
NF4466-Insertion-2
[»] chr4 (10 HSPs)
chr4 (230-793)||(33152362-33152919)
chr4 (8-147)||(33152075-33152214)
chr4 (321-450)||(3684754-3684883)
chr4 (321-412)||(2728602-2728693)
chr4 (176-233)||(33152212-33152269)
chr4 (321-447)||(2933581-2933707)
chr4 (319-447)||(12842304-12842433)
chr4 (795-842)||(33152937-33152985)
chr4 (358-447)||(4734152-4734241)
chr4 (327-365)||(40262465-40262503)
[»] chr2 (20 HSPs)
chr2 (8-233)||(2362611-2362836)
chr2 (321-451)||(33538197-33538327)
chr2 (34-228)||(39493469-39493663)
chr2 (35-234)||(39604275-39604474)
chr2 (35-233)||(39216616-39216814)
chr2 (35-226)||(39099546-39099737)
chr2 (35-233)||(39188779-39188977)
chr2 (34-159)||(39144554-39144679)
chr2 (639-723)||(39126052-39126138)
chr2 (75-226)||(39196542-39196693)
chr2 (75-228)||(39396682-39396835)
chr2 (639-699)||(39503675-39503735)
chr2 (346-447)||(24441976-24442077)
chr2 (75-187)||(39138645-39138754)
chr2 (377-447)||(40611590-40611660)
chr2 (140-228)||(39380524-39380612)
chr2 (537-628)||(2363076-2363167)
chr2 (639-700)||(2363202-2363261)
chr2 (75-157)||(39126485-39126567)
chr2 (75-184)||(39421257-39421366)
[»] chr5 (6 HSPs)
chr5 (321-454)||(900904-901037)
chr5 (319-456)||(2250343-2250480)
chr5 (320-454)||(15434431-15434565)
chr5 (321-421)||(30839962-30840062)
chr5 (377-447)||(8317378-8317448)
chr5 (343-445)||(33699997-33700099)
[»] chr3 (6 HSPs)
chr3 (321-451)||(26847677-26847807)
chr3 (324-451)||(40034749-40034876)
chr3 (7-233)||(51575916-51576142)
chr3 (336-450)||(2043754-2043870)
chr3 (321-378)||(30074962-30075019)
chr3 (326-402)||(8913926-8914002)
[»] chr7 (5 HSPs)
chr7 (321-450)||(6494766-6494895)
chr7 (321-454)||(38174639-38174772)
chr7 (321-454)||(45849428-45849562)
chr7 (321-402)||(46205831-46205912)
chr7 (343-438)||(22609835-22609930)
[»] chr6 (12 HSPs)
chr6 (325-452)||(29396465-29396592)
chr6 (322-454)||(22995993-22996123)
chr6 (322-454)||(23792277-23792407)
chr6 (318-454)||(18141401-18141537)
chr6 (321-440)||(7045132-7045251)
chr6 (369-454)||(22956998-22957083)
chr6 (369-454)||(23831309-23831394)
chr6 (329-454)||(21203236-21203367)
chr6 (321-440)||(6266427-6266546)
chr6 (327-447)||(9961152-9961272)
chr6 (351-440)||(33423685-33423774)
chr6 (343-421)||(34576170-34576247)
[»] chr1 (3 HSPs)
chr1 (324-450)||(9388583-9388709)
chr1 (357-451)||(10366587-10366681)
chr1 (343-447)||(9245811-9245915)
[»] chr8 (5 HSPs)
chr8 (320-446)||(43899034-43899161)
chr8 (319-363)||(24512327-24512371)
chr8 (342-402)||(28321032-28321092)
chr8 (336-421)||(38388395-38388479)
chr8 (320-357)||(37819136-37819173)


Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 230 - 793
Target Start/End: Original strand, 33152362 - 33152919
Alignment:
Q  230 ttggcacataaaatttccggtatgctaatttatgaatgttttgttcagacactagtctttctacacactgagccattatacttatttttatgagctatgt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152362 ttggcacataaaatttccggtatgctaatttatgaatgttttgttcagacactagtctttctacacactgagccattatacttatttttatgagctatgt 33152461  T
Q  330 tatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaat 429  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152462 tatttgtacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaat 33152561  T
Q  430 aagttgttggtcgtaca-atttggttc-tctatttttatctcactttgaagtgaattggttacatcacatcacgtggttcgcaaatgtataaatatatct 527  Q
    ||||||||||| || || || |  ||| ||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||    
T  33152562 aagttgttggttgttcacatatcattcctctatttttatctcactttgaagtgaattggttacattacatca--------gcaaatgtataaatatatct 33152653  T
Q  528 gtagtactcatatttttggattatgaagaaaaactatgatattaactgttaatagaaaattgaatttatatggaattggcttctcatacaattgatgcaa 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152654 gtagtactcatatttttggattatgaagaaaaactatgatattaactgttaatagaaaattgaatttatatggaattggcttctcatacaattgatgcaa 33152753  T
Q  628 aagttttctctatttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaatttgcatctctcttttgtctttatatgtga 727  Q
    ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152754 aagttctccctatttgttatgaaaaaattggcatcttggctgatgcttggaaagtgaaatagacttcaaatttgcatctctcttttgtctttatatgtga 33152853  T
Q  728 atgttctaaaccaagtgatcatcgatttcaagttacaaatatgcttcagttaaggacccatcgttc 793  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  33152854 atgttctaaaccaagtgatcatcgatttcaagttataaataagcttcagttaaggacccatcgttc 33152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 33152075 - 33152214
Alignment:
Q  8 cagaaccccatcattccattgtgtaaaggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatg 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152075 cagaaccccatcattccattgtgtaagggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatg 33152174  T
Q  108 ttaaacctcatgtgcaagaagatgcaatgagtctagcact 147  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  33152175 ttaaacctcatgtgcaagaagatgcaatgaatctagcact 33152214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 321 - 450
Target Start/End: Complemental strand, 3684883 - 3684754
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||| | |||||||||||||||| || |||||||||||| ||||| ||||||||||||||  ||||| ||||||  |||||||| |||||||    
T  3684883 gagctatgttatatgtacatctaaaattggataatcaatgcaacaacctttaactttgtgaggagcacaaaaatcgaaatcagacaaaatattattaaaa 3684784  T
Q  421 atagcaaataagttgttggtcgtacaattt 450  Q
    ||||||||||  ||||||||  ||||||||    
T  3684783 atagcaaatatattgttggttttacaattt 3684754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 2728693 - 2728602
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatat 412  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||  ||||| |||||| |||||||||    
T  2728693 gagctatgttatttgtacatttaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacataaatcgaaatcaagcaaaatat 2728602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 33152212 - 33152269
Alignment:
Q  176 actgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgggttgg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152212 actgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgggttgg 33152269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 447
Target Start/End: Complemental strand, 2933707 - 2933581
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||| ||||||||| |||| | ||||||| ||||| |||| ||||| ||||||| ||||||||||| || ||||||||||||   |||| ||  | ||||    
T  2933707 gagcaatgttatttgtacaaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagcgcgcaaatcaaaatcactaaaaaaatattaaaaa 2933608  T
Q  421 atagcaaataagttgttggtcgtacaa 447  Q
    |||| |||  |||||||||| ||||||    
T  2933607 atagtaaaatagttgttggttgtacaa 2933581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 319 - 447
Target Start/End: Complemental strand, 12842433 - 12842304
Alignment:
Q  319 atgagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatca-tgcaaaatatcatta 417  Q
    |||||| ||||||||| |||| | ||||||  ||||| ||| ||||||| |||||| ||||||||| || | |||||||||||| |  |||| ||  | |    
T  12842433 atgagcaatgttatttgtacaaccaaaattcaacaactaatacaacaacctttaatattgtgaggaacatgcaaatcaaaatcactaaaaaaaatattaa 12842334  T
Q  418 aaaatagcaaataagttgttggtcgtacaa 447  Q
    ||||||||||| ||||||||||| ||||||    
T  12842333 aaaatagcaaagaagttgttggttgtacaa 12842304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 795 - 842
Target Start/End: Original strand, 33152937 - 33152985
Alignment:
Q  795 agtcatgactgggaca-tcgtaggccaaactttggttatcttccaaccg 842  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  33152937 agtcatgactggaacaatcgtaggccaaactttggttatcttccaaccg 33152985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 447
Target Start/End: Original strand, 4734152 - 4734241
Alignment:
Q  358 atgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcgtacaa 447  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||   |||  ||  | ||||||||||||  |||||||||| ||||||    
T  4734152 atgcaacaacttttaatattgtgaggagcacgccaatcaaaatcactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaa 4734241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 40262503 - 40262465
Alignment:
Q  327 tgttatttttacatctaaaattggacaaccaatgcaaca 365  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  40262503 tgttatttgtacatctaaaattggacaactaatgcaaca 40262465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 2e-64; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 2362611 - 2362836
Alignment:
Q  8 cagaaccccatcattccattgtgtaaaggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatg 107  Q
    ||||||||||||||||||  |||||| ||||| |||| || |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||    
T  2362611 cagaaccccatcattccacagtgtaagggagaaaatgttgtaattattgatgatcaccacattgatctgctcgaacaactgatgagaatctcaccacatg 2362710  T
Q  108 ttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttct 207  Q
    ||||||||||||||| |||||| |||||||  |||||||||||  |||||||||||||||| ||||||||||||||| | || |  |||||||| ||| |    
T  2362711 ttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacattggcgaaaatactgaaaatccagtgccagttctggggttttt 2362810  T
Q  208 gctacttctgtcaatttatgggttgg 233  Q
    ||| ||||||||||||||||| ||||    
T  2362811 gctccttctgtcaatttatggattgg 2362836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 321 - 451
Target Start/End: Complemental strand, 33538327 - 33538197
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33538327 gagctatgttatttgtacatttaaaattggacaaccaatgcaataatttttaattttgtgaggagtacggaaatcaaaatcatgcaaaatatcattaaaa 33538228  T
Q  421 atagcaaataagttgttggtcgtacaatttg 451  Q
    |||| ||||||||||||||| ||||||||||    
T  33538227 atagtaaataagttgttggttgtacaatttg 33538197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 39493663 - 39493469
Alignment:
Q  34 aggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgca 133  Q
    ||||||| ||||||||||||||||||||  |||||||  | |||||||| |||||| || |||||||||| || ||| |||||||||  ||||||| |||    
T  39493663 aggagacgatgctgcaattattgatgatagccacattcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagca 39493564  T
Q  134 atgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgg 228  Q
    ||||  ||||||||| || |||||||| ||||  |  |||| || |||||||| ||   |||||| |||||||| || |||||||||||||||||    
T  39493563 atgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatgg 39493469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 39604275 - 39604474
Alignment:
Q  35 ggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaa 134  Q
    ||||||||||||| |||||||||||||    |||||  | ||||| |||||||||||||||||  ||||||| ||||||||| |||   |||||| ||||    
T  39604275 ggagacaatgctgtaattattgatgatagagacattcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaa 39604374  T
Q  135 tgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgggttggc 234  Q
    |||  |||||||||||||||||| || ||||  | |||||||| |||||||  ||    |||||||||||||| || ||| ||||||||||||| |||||    
T  39604375 tgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttatggattggc 39604474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 39216616 - 39216814
Alignment:
Q  35 ggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaa 134  Q
    |||||||||||||  ||||||| ||||| ||| ||| ||| ||| ||||||||||||| ||||||||| ||| ||||||||  |||   |||||| |||     
T  39216616 ggagacaatgctgtgattattgctgattaccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcat 39216715  T
Q  135 tgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgggttgg 233  Q
    |||  |||||| || |||||||| || ||||  | ||||||||| |||||||| |   |||||| |||||||| || ||| ||||||||||||| ||||    
T  39216716 tgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattgg 39216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 39099546 - 39099737
Alignment:
Q  35 ggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaa 134  Q
    ||||||||||||| ||||||||||||     |||||  | |||||||||||||||||||||||||||||||| | ||||||  |||   |||||| || |    
T  39099546 ggagacaatgctgtaattattgatgaaagagacattcttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcga 39099645  T
Q  135 tgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttat 226  Q
    |||  || |||||||| |||||| |||  ||  | |||| |||||||||||| ||   |||||| |||||||| || |||||||||||||||    
T  39099646 tgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttat 39099737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 39188977 - 39188779
Alignment:
Q  35 ggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaa 134  Q
    |||||||||| || |||||||||||||  |||||||  | |||||  |  ||||||||||||||||||  |  |||||||||||||   ||| |||||||    
T  39188977 ggagacaatgttgtaattattgatgatagccacattcttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaa 39188878  T
Q  135 tgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgggttgg 233  Q
    |||  ||||||||| |||| |||||| ||||    ||||||| || ||||||| |   |||||| |||||||| || ||||| ||||||||||| ||||    
T  39188877 tgaaactagcacttgatttaaaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttgg 39188779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 39144554 - 39144679
Alignment:
Q  34 aggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgca 133  Q
    ||||||| |||||| |||||||||||||  |||||||  | ||||| |  |||||| || |||||||| | || |||||||||||||  ||||||| |||    
T  39144554 aggagacgatgctgtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagca 39144653  T
Q  134 atgagtctagcacttaatttgaaagc 159  Q
    ||||  ||||||||| ||||||||||    
T  39144654 atgaagctagcacttgatttgaaagc 39144679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 639 - 723
Target Start/End: Original strand, 39126052 - 39126138
Alignment:
Q  639 atttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaatttg--catctctcttttgtctttatat 723  Q
    |||||||| || |||||||  |||||||| |||||||||||| ||||||| ||||||||||||   |||||||||| ||||||||||    
T  39126052 atttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaaatttgtatatctctctttagtctttatat 39126138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 39196693 - 39196542
Alignment:
Q  75 tgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattggggaaaa 174  Q
    |||| |||||||||||||||||||||||| || ||||||||  ||||  | |||| ||| |||  |||||| || ||||||||||| ||||    || ||    
T  39196693 tgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaa 39196594  T
Q  175 tactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttat 226  Q
    ||||||||||||| |   |||||| || |||||||| ||| |||||||||||    
T  39196593 tactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttat 39196542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 39396835 - 39396682
Alignment:
Q  75 tgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattggggaaaa 174  Q
    |||| ||| ||||||||||||||||||||  | ||| ||||  |||   |||||| ||| |||  ||||||| | |||||| |||||||||| | |||||    
T  39396835 tgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaa 39396736  T
Q  175 tactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgg 228  Q
    ||||||||||||| |   |||||| |||||| || | ||| |||||||||||||    
T  39396735 tactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatgg 39396682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 699
Target Start/End: Complemental strand, 39503735 - 39503675
Alignment:
Q  639 atttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaatt 699  Q
    |||||||| || ||| |||| ||||||||||||||||||||| |||||||||||| |||||    
T  39503735 atttgttaagagaaatttggtatcttggctaatgcttggaaaatgaaatagactttaaatt 39503675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 24442077 - 24441976
Alignment:
Q  346 attggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcatta-aaaatagcaaataagttgttggtcgta 444  Q
    |||||||||| ||||||||| |||||||| |||||||||||| | ||||| ||||||   |||| || |||| ||||||||||| | ||||||||| |||    
T  24442077 attggacaactaatgcaacaccttttaatattgtgaggagcatgcaaatcgaaatcactaaaaaaat-attataaaatagcaaaaaggttgttggttgta 24441979  T
Q  445 caa 447  Q
    |||    
T  24441978 caa 24441976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 39138645 - 39138754
Alignment:
Q  75 tgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattggggaaaa 174  Q
    |||| |||||||||||||||||||||||  |  |||||||| ||||   |||||| ||| |||  |||||||||||| |||||||| ||||   | ||||    
T  39138645 tgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacat---gaaaaa 39138741  T
Q  175 tactgaaaattct 187  Q
    |||||||||||||    
T  39138742 tactgaaaattct 39138754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 40611660 - 40611590
Alignment:
Q  377 tgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcgtacaa 447  Q
    ||||||||||||| ||||||||||||   |||||||  | |||||||||||| ||||||||||| ||||||    
T  40611660 tgtgaggagcacgcaaatcaaaatcaataaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 40611590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 39380612 - 39380524
Alignment:
Q  140 ctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttctgctacttctgtcaatttatgg 228  Q
    ||||||||| ||||||||||||||||  | || ||||||||| |||||||   |||||| || ||||| || ||| |||||||||||||    
T  39380612 ctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatgg 39380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 628
Target Start/End: Original strand, 2363076 - 2363167
Alignment:
Q  537 atatttttggattatgaagaaaaactatgatattaactgttaatagaaaattgaatttatatggaattggcttctcatacaattgatgcaaa 628  Q
    |||||||||||||  ||  | |||||||| ||||| |||||| ||  |||||||| | |||||||||||||||||| ||||  |||||||||    
T  2363076 atatttttggattgggattataaactatggtattagctgttactaagaaattgaactgatatggaattggcttctcgtacacatgatgcaaa 2363167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 639 - 700
Target Start/End: Original strand, 2363202 - 2363261
Alignment:
Q  639 atttgttatgaaaaaattggcatcttggctaatgcttggaaagtgaaatagacttcaaattt 700  Q
    |||||||||  |||| ||||||| |||||||||||||||||| ||||  |||||||||||||    
T  2363202 atttgttatagaaaagttggcatattggctaatgcttggaaaatgaa--agacttcaaattt 2363261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 39126485 - 39126567
Alignment:
Q  75 tgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaa 157  Q
    ||||||||||||||||||||||||||| | || || |||||| |||   |||||| |||||||  ||||| ||||| ||||||    
T  39126485 tgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaa 39126567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 39421366 - 39421257
Alignment:
Q  75 tgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattggggaaaa 174  Q
    |||| ||||||||||||| ||||||||||||| ||||| ||  |||  ||||||| ||| |||  || || ||| ||||||||||| | || |  |||||    
T  39421366 tgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaa 39421267  T
Q  175 tactgaaaat 184  Q
    ||||||||||    
T  39421266 tactgaaaat 39421257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 9e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 321 - 454
Target Start/End: Complemental strand, 901037 - 900904
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  901037 gagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcatggaaaacaaaatcatgcaaaatatcattaaaa 900938  T
Q  421 atagcaaataagttgttggtcgtacaatttggtt 454  Q
    |||||||||||||||||||| |||||||||||||    
T  900937 atagcaaataagttgttggttgtacaatttggtt 900904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 319 - 456
Target Start/End: Complemental strand, 2250480 - 2250343
Alignment:
Q  319 atgagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaa 418  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2250480 atgagctatgttatttgtatatctaaaattggataaccaatgcaataatttttaattttgtgaggagtacggaaatcaaaatcatgcaaaatatcattaa 2250381  T
Q  419 aaatagcaaataagttgttggtcgtacaatttggttct 456  Q
    |||||  |||||| |||||| | |||||||||| ||||    
T  2250380 aaataataaataaattgttgattgtacaatttgattct 2250343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 320 - 454
Target Start/End: Complemental strand, 15434565 - 15434431
Alignment:
Q  320 tgagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaa 419  Q
    |||||| |||||||| ||||||||||| |||||||  |||| |||||| ||||| ||| |||||||||| ||||||||||||| ||||||||||||||||    
T  15434565 tgagctgtgttatttgtacatctaaaagtggacaattaatggaacaacctttaactttatgaggagcacagaaatcaaaatcaagcaaaatatcattaaa 15434466  T
Q  420 aatagcaaataagttgttggtcgtacaatttggtt 454  Q
    | ||||||||||||||||||| |||||||||||||    
T  15434465 agtagcaaataagttgttggttgtacaatttggtt 15434431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 321 - 421
Target Start/End: Complemental strand, 30840062 - 30839962
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    ||||||| |||||| ||||| ||||||||||||| ||||| |||||| ||||| ||||||||||| || |||||| |||||| ||||||||| |||||||    
T  30840062 gagctatattatttgtacatataaaattggacaatcaatggaacaacctttaactttgtgaggagtacagaaatcgaaatcaagcaaaatattattaaaa 30839963  T
Q  421 a 421  Q
    |    
T  30839962 a 30839962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 447
Target Start/End: Original strand, 8317378 - 8317448
Alignment:
Q  377 tgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcgtacaa 447  Q
    ||||||||||||| ||||||||||||   |||||||  | |||||||||||| ||||||||||| ||||||    
T  8317378 tgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 8317448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 33699997 - 33700099
Alignment:
Q  343 aaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcg 442  Q
    ||||||| ||||| ||||||||| | ||| ||  |||||| |||||| |||||||||||||  |||||||  | |||||| |||||  |||||||||| |    
T  33699997 aaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaaattgcaaaagagttgttggttg 33700096  T
Q  443 tac 445  Q
    |||    
T  33700097 tac 33700099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 321 - 451
Target Start/End: Original strand, 26847677 - 26847807
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26847677 gagctatgttatttgtacatctaaaattagacaaccaatgcaataacttttaattttgtgaggagcacggaaaacaaaatcatgcaaaatatcattaaaa 26847776  T
Q  421 atagcaaataagttgttggtcgtacaatttg 451  Q
    |||||||||||||||||||| ||||||||||    
T  26847777 atagcaaataagttgttggttgtacaatttg 26847807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 324 - 451
Target Start/End: Complemental strand, 40034876 - 40034749
Alignment:
Q  324 ctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaata 423  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||    
T  40034876 ctatgttatttgtacatttaaaattggacaaccaatgcaacaacttttaattttatgaggagcacggaaattaaaatcatgtaaaatattattaaaaata 40034777  T
Q  424 gcaaataagttgttggtcgtacaatttg 451  Q
      ||||||||||||||| ||||||||||    
T  40034776 ataaataagttgttggttgtacaatttg 40034749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 51575916 - 51576142
Alignment:
Q  7 acagaaccccatcattccattgtgtaaaggagacaatgctgcaattattgatgatttccacattgatttgctcgaacaactgatgagaatctcaccacat 106  Q
    |||||||| ||||||||||   ||||| |||||||||| || || |||| ||| |  |||| ||| | |||| |||||||| ||||||||||||||||||    
T  51575916 acagaaccacatcattccacattgtaagggagacaatgttgtaactattaatggtagccacgttgttctgcttgaacaactaatgagaatctcaccacat 51576015  T
Q  107 gttaaacctcatgtgcaagaagatgcaatgagtctagcacttaatttgaaagcttacattggggaaaatactgaaaattctgtccaggttctgggttttc 206  Q
     | ||||||||||| |||||||| ||| |||  ||||  || ||||||||||| |||||| | ||||||||||||||||| ||   |||||| |||| ||    
T  51576016 atcaaacctcatgtacaagaagaagcattgaaactagtcctcaatttgaaagcgtacattagtgaaaatactgaaaattccgtggtggttcttggttatc 51576115  T
Q  207 tgctacttctgtcaatttatgggttgg 233  Q
    |||| ||||||||||||||||| ||||    
T  51576116 tgctccttctgtcaatttatggattgg 51576142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 336 - 450
Target Start/End: Complemental strand, 2043870 - 2043754
Alignment:
Q  336 tacatctaaaattggacaaccaatgcaaca--acttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagt 433  Q
    ||||||||||||||||||| ||||||||||  |||||||| ||||| ||||||||  ||||| ||||||  ||||||||||||||| |||||||||||||    
T  2043870 tacatctaaaattggacaatcaatgcaacacaacttttaactttgtaaggagcacataaatcgaaatcaatcaaaatatcattaaagatagcaaataagt 2043771  T
Q  434 tgttggtcgtacaattt 450  Q
    ||||||| |||||||||    
T  2043770 tgttggttgtacaattt 2043754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 30075019 - 30074962
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttg 378  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30075019 gagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttg 30074962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 8914002 - 8913926
Alignment:
Q  326 atgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatca 402  Q
    ||||||||| ||||   ||||||| ||||| ||||||||||| |||||| |||||||||||||  ||||| ||||||    
T  8914002 atgttatttgtacaatcaaaattgaacaactaatgcaacaacctttaatattgtgaggagcacacaaatcgaaatca 8913926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 321 - 450
Target Start/End: Complemental strand, 6494895 - 6494766
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  6494895 gagctatgttatttgtacatctaaaattggacaaccaatgcaacaacttttaattttgtgaagagcacggaaaacaaaatcatgcaaaatatcattaaaa 6494796  T
Q  421 atagcaaataagttgttggtcgtacaattt 450  Q
    |||||||||||||| ||| | |||||||||    
T  6494795 atagcaaataagttattgattgtacaattt 6494766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 321 - 454
Target Start/End: Complemental strand, 38174772 - 38174639
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| ||||||||| |||||||    
T  38174772 gagctatgttatttgtacatctaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacagaaatcgaaatcaagcaaaatattattaaaa 38174673  T
Q  421 atagcaaataagttgttggtcgtacaatttggtt 454  Q
    ||| ||| |||||| ||||| |||||||||||||    
T  38174672 atatcaagtaagttattggttgtacaatttggtt 38174639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 321 - 454
Target Start/End: Original strand, 45849428 - 45849562
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaa-tcaaaatcatgcaaaatatcattaaa 419  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||  ||| | ||||||| ||||||||| ||||||    
T  45849428 gagctatgttatttgtacatctaaaatttgacaatcaatgcaacaacttttaatgttgtgaggagcacataaattgaaaatcaagcaaaatattattaaa 45849527  T
Q  420 aatagcaaataagttgttggtcgtacaatttggtt 454  Q
    |||||||||||| || ||||| |||||||||||||    
T  45849528 aatagcaaataaattattggttgtacaatttggtt 45849562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 46205831 - 46205912
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatca 402  Q
    |||| ||||||| | |||| | ||||||||||||| ||||||||| |||||||| ||||||||||||||  |||| ||||||    
T  46205831 gagcaatgttatatgtacaaccaaaattggacaactaatgcaacaccttttaatattgtgaggagcacgtgaatcgaaatca 46205912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 22609930 - 22609835
Alignment:
Q  343 aaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttg 438  Q
    ||||||| ||||| ||||||||| | ||| ||  |||||| |||||| |||||||||||||  |||||||  |||||||| |||||  ||||||||    
T  22609930 aaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatttaaaaattgcaaaagagttgttg 22609835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 325 - 452
Target Start/End: Complemental strand, 29396592 - 29396465
Alignment:
Q  325 tatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatag 424  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||  ||||| ||||||  ||||||||||||||||||||    
T  29396592 tatgttatttgtacatctaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatag 29396493  T
Q  425 caaataagttgttggtcgtacaatttgg 452  Q
    |||||||||||||||| |||||||||||    
T  29396492 caaataagttgttggttgtacaatttgg 29396465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 322 - 454
Target Start/End: Complemental strand, 22996123 - 22995993
Alignment:
Q  322 agctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaa 421  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||  ||||| |||||| ||||||||| ||||||||    
T  22996123 agctatgttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaatcaggcaaaatattattaaaaa 22996024  T
Q  422 tagcaaataagttgttggtcgtacaatttggtt 454  Q
    ||||||  |||||||||||  ||||||||||||    
T  22996023 tagcaa--aagttgttggttatacaatttggtt 22995993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 322 - 454
Target Start/End: Original strand, 23792277 - 23792407
Alignment:
Q  322 agctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaa 421  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||  ||||| |||||| ||||||||| ||||||||    
T  23792277 agctatgttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaatcaggcaaaatattattaaaaa 23792376  T
Q  422 tagcaaataagttgttggtcgtacaatttggtt 454  Q
    ||||||  |||||||||||  ||||||||||||    
T  23792377 tagcaa--aagttgttggttatacaatttggtt 23792407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 318 - 454
Target Start/End: Complemental strand, 18141537 - 18141401
Alignment:
Q  318 tatgagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcatta 417  Q
    |||||| |||||||||| ||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||  ||||| |||||| | ||||||| ||||    
T  18141537 tatgagttatgttatttgtacatttaaaattggacaaccaatacaacaacctttaactttgtgaggagtacataaatcgaaatcaagtaaaatattatta 18141438  T
Q  418 aaaatagcaaataagttgttggtcgtacaatttggtt 454  Q
    ||||||| |||||||||| |||| |||| ||||||||    
T  18141437 aaaatagaaaataagttgctggttgtacgatttggtt 18141401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 321 - 440
Target Start/End: Original strand, 7045132 - 7045251
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||||||||||| | |||| |||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||| |||  ||||||||  ||||||    
T  7045132 gagctatgttatgtgtacaactaaaatttgacaaccaatgcaacaacttataagtttgtgaggagcacagaaatcaaattcaaacaaaatatatttaaaa 7045231  T
Q  421 atagcaaataagttgttggt 440  Q
    |||| |||| | ||||||||    
T  7045232 atagtaaatgaattgttggt 7045251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 369 - 454
Target Start/End: Complemental strand, 22957083 - 22956998
Alignment:
Q  369 tttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcgtacaatttggtt 454  Q
    ||||||||||||||||||||  ||||| |||||| | ||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  22957083 tttaattttgtgaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggtt 22956998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 369 - 454
Target Start/End: Original strand, 23831309 - 23831394
Alignment:
Q  369 tttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcgtacaatttggtt 454  Q
    ||||||||||||||||||||  ||||| |||||| | ||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  23831309 tttaattttgtgaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggtt 23831394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 454
Target Start/End: Original strand, 21203236 - 21203367
Alignment:
Q  329 ttatttttacatctaaaattggacaaccaatgcaacaacttttaatttt------gtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaat 422  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||| |||      || |||| ||  ||||||||||||| |||||| || |||||||||    
T  21203236 ttatttgtacatttaaaattggacaaccaatgcaacaacctttaactttaactttgtaaggatcatagaaatcaaaatcaagcaaaacattattaaaaat 21203335  T
Q  423 agcaaataagttgttggtcgtacaatttggtt 454  Q
    | ||| |||||||||| | |||||||||||||    
T  21203336 atcaagtaagttgttgattgtacaatttggtt 21203367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 321 - 440
Target Start/End: Original strand, 6266427 - 6266546
Alignment:
Q  321 gagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaa 420  Q
    |||| ||||||||| |||| ||||||||| |||||  || ||||||| |||||| |||||||||||||| ||||| ||||||   |||| ||  | ||||    
T  6266427 gagcaatgttatttgtacaactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacgcaaatcgaaatcactaaaaaaatattaaaaa 6266526  T
Q  421 atagcaaataagttgttggt 440  Q
    ||||||||  ||||||||||    
T  6266527 atagcaaaatagttgttggt 6266546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 447
Target Start/End: Original strand, 9961152 - 9961272
Alignment:
Q  327 tgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagca 426  Q
    |||||||| |||| ||||||||| ||||  |||| |||| | | |||  ||||||| |||||| ||||| ||||||  ||||| ||  | ||||||||||    
T  9961152 tgttatttgtacaactaaaattgaacaattaatgtaacaccatataacattgtgagaagcacgtaaatcgaaatcaatcaaaaaatattaaaaaatagca 9961251  T
Q  427 aataagttgttggtcgtacaa 447  Q
    |||||||||||||| ||||||    
T  9961252 aataagttgttggttgtacaa 9961272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 33423685 - 33423774
Alignment:
Q  351 acaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggt 440  Q
    ||||||||| ||||||||  |||||||||||| ||  |||||||| ||||   |||||||||  | ||||||||||| ||||||||||||    
T  33423685 acaaccaatacaacaactcataattttgtgagtagtgcggaaatcgaaattgggcaaaatatattaaaaaatagcaattaagttgttggt 33423774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 34576170 - 34576247
Alignment:
Q  343 aaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaa 421  Q
    ||||||| ||||| ||||||||| ||||| ||  |||||| |||||| |||||||||||||  ||||||| ||||||||    
T  34576170 aaaattgaacaactaatgcaacaccttttgataatgtgagaagcacgcaaatcaaaatcattaaaaatat-attaaaaa 34576247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 324 - 450
Target Start/End: Complemental strand, 9388709 - 9388583
Alignment:
Q  324 ctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaata 423  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||| | ||||||||||||||||||  ||||| ||||||  |||||||||||||||||||    
T  9388709 ctatgttatttgtacctctaaaattgaacaaccaatgcaacaacctctaattttgtgaggagcacataaatcgaaatcagacaaaatatcattaaaaata 9388610  T
Q  424 gcaaataagttgttggtcgtacaattt 450  Q
    | ||||||||||||||| |||||||||    
T  9388609 gtaaataagttgttggttgtacaattt 9388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 357 - 451
Target Start/End: Complemental strand, 10366681 - 10366587
Alignment:
Q  357 aatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcgtacaatttg 451  Q
    ||||||||||| ||||| ||| ||||||||||  ||||| ||||||   |||||||||||||||||| |||||||||||||||| ||||||||||    
T  10366681 aatgcaacaacctttaactttatgaggagcacataaatcgaaatcaaataaaatatcattaaaaataacaaataagttgttggttgtacaatttg 10366587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 9245811 - 9245915
Alignment:
Q  343 aaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggtcg 442  Q
    ||||||| |||||  ||||||||||||||||| |||||||| | ||| |||| ||||||||  |||  ||  | ||||||||||||  |||||||||| |    
T  9245811 aaaattgaacaacttatgcaacaacttttaatattgtgaggtgtacgcaaataaaaatcattaaaagaatattaaaaaatagcaaaatagttgttggttg 9245910  T
Q  443 tacaa 447  Q
    |||||    
T  9245911 tacaa 9245915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 446
Target Start/End: Complemental strand, 43899161 - 43899034
Alignment:
Q  320 tgagctatgttatttttacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatc-atgcaaaatatcattaa 418  Q
    ||||||||||||||| |||| | ||||||| ||||| ||||||||| | ||||||  ||| ||||||||| ||||||||||| ||  |||| ||  | ||    
T  43899161 tgagctatgttatttgtacaaccaaaattgaacaactaatgcaacaccctttaatactgtaaggagcacgcaaatcaaaatcaataaaaaaaatattaaa 43899062  T
Q  419 aaatagcaaataagttgttggtcgtaca 446  Q
    |||||||||| ||||||||||| |||||    
T  43899061 aaatagcaaagaagttgttggttgtaca 43899034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 24512371 - 24512327
Alignment:
Q  319 atgagctatgttatttttacatctaaaattggacaaccaatgcaa 363  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  24512371 atgagctatgttatttgtacatttaaaattggacaaccaatgcaa 24512327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 28321032 - 28321092
Alignment:
Q  342 taaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatca 402  Q
    ||||||||||||||  |||||||||| ||| | ||||||||||||||| ||||||||||||    
T  28321032 taaaattggacaacttatgcaacaacctttgactttgtgaggagcacgcaaatcaaaatca 28321092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 38388479 - 38388395
Alignment:
Q  336 tacatctaaaattggacaaccaatgcaacaacttttaattttgtgaggagcacggaaatcaaaatcatgcaaaatatcattaaaaa 421  Q
    |||| |||||||| ||||||||||||| |||| | ||  |||||||| |||||| |||||||||||  ||||||||| ||||||||    
T  38388479 tacaactaaaattagacaaccaatgcagcaacctatagctttgtgagaagcacgtaaatcaaaatcgagcaaaatat-attaaaaa 38388395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 37819136 - 37819173
Alignment:
Q  320 tgagctatgttatttttacatctaaaattggacaacca 357  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  37819136 tgagctatgttatttgtacatttaaaattggacaacca 37819173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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