View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4466-Insertion-4 (Length: 731)
Name: NF4466-Insertion-4
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 710
Target Start/End: Original strand, 48106875 - 48107577
Alignment:
| Q |
7 |
agtaagcatagaagaataatgcaagtttcgtattggattagcttaccctttcaatgttgttgtcttggtgtgatctccattcctttttagtaaatggttg |
106 |
Q |
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| T |
48106875 |
agtaagcatagaagaataatgcaagtttcgtattgcattagcttaccctttcaatattgttgtcttggtgtgatctccattcctttttagtaaatggttg |
48106974 |
T |
|
| Q |
107 |
gaaggacacactatcagcccatatttccacacttgaattattggtctggaatggattcttagtcaatttcatttaccaacnnnnnnngttacataacaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
48106975 |
caaggacacactatcagcccatatttccacacttgaattattgctctacaatgcattcttagtcaatttcatttaccaactttttttgctacataacaga |
48107074 |
T |
|
| Q |
207 |
tttcattttagataagaattcagaaataattaggaccaattcagaaagagtacaagggccaaaaagtacatgtaaaaattttagataagaactttctttt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107075 |
tttcattttagataagaattcagaaataattaggaccaattcagaaaaagtacaaggtccaaaaagtacatgtaaaaattttagataagaactttctttt |
48107174 |
T |
|
| Q |
307 |
cttggttcaataaaagaagaaggggtaaatatgttttcaatgggcttaaaattacgtgttttggtattaagtctctacnnnnnnnnttattcaataaaaa |
406 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
48107175 |
cttgcttcaataaaagaagaagggttaaatatgttttcaatcggcttaaaattacgtgttttggtattaagtctctacaaaaaaaat-attcaataaaaa |
48107273 |
T |
|
| Q |
407 |
catatttgactcaaagaagaatgcggttaacctcgaaaagaatctcaggagggctcgagaagtttgcgactatgcgaccttttagaagagaccaacatcc |
506 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
48107274 |
catatttgactcaaagaagaatgcagttaacctcgaaaagaatctcagcagggctcgagaagtttgcaactatgccaccttttagaagagaccaacatcc |
48107373 |
T |
|
| Q |
507 |
atgctttggtatcacatggccaccatgcaccagttgatcacttccatttgttttaaataccgcagaaattggggcacttccttcactcagctgaagccaa |
606 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
48107374 |
atgctttgctatcacatggccaccatgcaccagttgatcacttccatttgttttaaataccacagaaattgtgtcacttccttcactcagctgaagccaa |
48107473 |
T |
|
| Q |
607 |
gctgaatgtggaaataaaatcaatcaaaatatggtttataaaacaaatggattaacggtcaatatggtaatttacattcatttgatgaatggtagggact |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
48107474 |
gctgaatgtggaaataaaatcaatcaaaatatgttttataaaacaaatgaattaacgatcaatatgataatttacattcatttgatgaatgttagtgact |
48107573 |
T |
|
| Q |
707 |
gaga |
710 |
Q |
| |
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|||| |
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|
| T |
48107574 |
gaga |
48107577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 433 - 613
Target Start/End: Original strand, 48068321 - 48068498
Alignment:
| Q |
433 |
ttaacctcgaaaagaatctcaggagggctcgagaagtttgcgactatgcgaccttttagaagagaccaacatccatgctttggtatcacatggccaccat |
532 |
Q |
| |
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|||||||| ||||| || |||| |||||| || || ||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| | |
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| T |
48068321 |
ttaacctcaaaaaggatttcagcagggcttgaaaattttgcaactatgcctccttttagaagagaccaacatccatattttgctatcacatggccacctt |
48068420 |
T |
|
| Q |
533 |
gcaccagttgatcacttccatttgttttaaataccgcagaaattggggcacttccttcactcagctgaagccaagctgaat |
613 |
Q |
| |
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|||| | |||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||| | ||||||||||| |
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| T |
48068421 |
ttaccaat---tcacttccatttattttaaataccacagaaattgtgtcacttccttcactcagctggaaccaagctgaat |
48068498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 436 - 613
Target Start/End: Original strand, 48063660 - 48063834
Alignment:
| Q |
436 |
acctcgaaaagaatctcaggagggctcgagaagtttgcgactatgcgaccttttagaagagaccaacatccatgctttggtatcacatggccaccatgca |
535 |
Q |
| |
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||||| ||||||||||||| |||||| || |||||||| ||||| | |||||||| || |||||||||||||| || | |||||||||||||||||||| |
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| T |
48063660 |
acctcaaaaagaatctcagcagggcttgaaaagtttgcaactataccgccttttagcagcgaccaacatccatgtttggctatcacatggccaccatgca |
48063759 |
T |
|
| Q |
536 |
ccagttgatcacttccatttgttttaaataccgcagaaattggggcacttccttcactcagctgaagccaagctgaat |
613 |
Q |
| |
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| T |
48063760 |
ccagt---tcacttccatttcttttaaatacaactgacacaatgtcacttccttcactgagctgaaaccaagctgaat |
48063834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 436 - 620
Target Start/End: Original strand, 48100903 - 48101084
Alignment:
| Q |
436 |
acctcgaaaagaatctcaggagggctcgagaagtttgcgactatgcgaccttttagaagagaccaacatccatgctttggtatcacatggccaccatgca |
535 |
Q |
| |
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||||| ||||||||||||| |||||| || ||||| || ||||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||| | | |
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| T |
48100903 |
acctcaaaaagaatctcagcagggcttgaaaagttggcaactatgccaccttttagaagagaccagcatccatgctttgctatcacatgaccacctcgta |
48101002 |
T |
|
| Q |
536 |
ccagttgatcacttccatttgttttaaataccgcagaaattggggcacttccttcactcagctgaagccaagctgaatgtggaaa |
620 |
Q |
| |
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| | | |||||||||||| |||||||||| | || | ||||||||||||||| ||||| |||||||||||||||||| |
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| T |
48101003 |
caaat---tcacttccatttattttaaatacaactgatacaaactcacttccttcactcaactgaaaccaagctgaatgtggaaa |
48101084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 48067188 - 48067288
Alignment:
| Q |
38 |
attggattagcttaccctttcaatgttgttgtcttggtgtgatctccattcctttttagtaaatggttggaaggacacactatcagcccatatttccaca |
137 |
Q |
| |
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|||||||||||||||||| |||||| ||| | |||||||||||||||||| |||| | |||||||| || || |||||||||| ||||| ||||||| |
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| T |
48067188 |
attggattagcttaccctctcaatgctgtcggcttggtgtgatctccattgtgttttgttgaatggttgtaaagagacactatcagtccataattccaca |
48067287 |
T |
|
| Q |
138 |
c |
138 |
Q |
| |
|
| |
|
|
| T |
48067288 |
c |
48067288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 48100237 - 48100335
Alignment:
| Q |
39 |
ttggattagcttaccctttcaatgttgttgtcttggtgtgatctccattcctttttagtaaatggttggaaggacacactatcagcccatatttccaca |
137 |
Q |
| |
|
||||| ||||||||||| |||| | | | |||||| ||||||||||||| || || || |||||||| ||||| |||||||||||||||| ||||||| |
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|
| T |
48100237 |
ttggactagcttaccctctcaacgctatcgtcttgctgtgatctccattgtttcttggtgaatggttgtaaggagacactatcagcccatagttccaca |
48100335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 48063230 - 48063324
Alignment:
| Q |
43 |
attagcttaccctttcaatgttgttgtcttggtgtgatctccattcctttttagtaaatggttggaaggacacactatcagcccatatttccaca |
137 |
Q |
| |
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||||||||||||| |||||| || | ||||||||||| ||||||| || | | || |||||||| ||||| ||||||| | |||||| ||||||| |
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| T |
48063230 |
attagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccaca |
48063324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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