View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4466-Insertion-5 (Length: 707)

Name: NF4466-Insertion-5
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4466-Insertion-5
NF4466-Insertion-5
[»] chr1 (1 HSPs)
chr1 (8-707)||(5754549-5755235)


Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Complemental strand, 5755235 - 5754549
Alignment:
Q  8 ttaaattggtattctctctctctaccactttcttaaaccttcttaaatcctgtcttgccacaaagtaaaactagaattagagtagtaacataagtactgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5755235 ttaaattggtattctctctctctaccactttcttaaaccttcttaaatcctgtcttgccacaaagtaaaactagaattagagtagtaacataagtagtgt 5755136  T
Q  108 tgtgacatgctttaaaatctcacattgaaagcgcatatatgaagc-atgcgctttcgtcatggcctggtgcatgaggcgcatcaggcccacaagtcattg 206  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||  ||||||||||| |||||||||  |||| | ||||    
T  5755135 tgtgacatgctttaaaatctcacattgaaagcgcatgtatggagccatgcgctttcgtcatggctaggtgcatgaggtgcatcaggct-acaaattattg 5755037  T
Q  207 tagggtttgggtttttccctgtcattttagtgtgt--ttaatgtttaaaggtcaagaaaatatannnnnnnnnnnnnngtgtaatcttataaaaccaata 304  Q
    |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  5755036 tagggtttgggtttttccatgtcattttagtgtgtgtttaatgtttaaaggtcaagaaaatatttttttttcttttttgtgtaatcttataaaaccaata 5754937  T
Q  305 tgaaatgactctaatgaattgtagaggttaagagttgagagtgagattgttgggttgaaaaatattgtaaatatttaggatgagtgaaaatctttaagtc 404  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5754936 tgaaatgactctaatgaattgtagaggttaagagttgagagtaagattattgggttgaaaaatattgtaaatatctaagatgagtgaaaatctttaagtc 5754837  T
Q  405 ttgttcattcatataaagagattggaaaatatataggtagaaatttagtagtttttgaagaagttagttgatgataatttcttgtacatatatctcttgt 504  Q
    ||||    |||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5754836 ttgt----tcatataatgagattggaaa----ataggtagaaatttagtagtttttgaagaagttagttgaagataatttcttgtacatatatctcttgt 5754745  T
Q  505 atcttttgtaagaaataacttattgatagtgtatgatccaccctgaataccacatacaaattgaatataaatacgatcattttttatgaccatagtattt 604  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5754744 atcttttgtaaga---aacttattgatagtgtatgatccaccctgaataccacatacaaattgaatataaatacgatcattttttatgaccatagtattt 5754648  T
Q  605 ctctaacaacaacacaaatcacattataattattatatcaaaaaacaatataaataatattttattcaagatgtctccatatccgtcctaataccccatg 704  Q
    ||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5754647 ctc-aacaacaacacaaatcacattata---attatatcaaaaaacaatataaataatattttattcaagatgtttccatatccgtcctaataccccatg 5754552  T

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