View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4466-Insertion-8 (Length: 350)

Name: NF4466-Insertion-8
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4466-Insertion-8
NF4466-Insertion-8
[»] chr3 (8 HSPs)
chr3 (7-350)||(33618375-33618718)
chr3 (9-266)||(33609202-33609459)
chr3 (5-155)||(33588482-33588632)
chr3 (5-155)||(33595654-33595804)
chr3 (5-155)||(33602785-33602935)
chr3 (9-268)||(33627592-33627851)
chr3 (196-262)||(33622758-33622824)
chr3 (5-73)||(33562977-33563045)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 33618375 - 33618718
Alignment:
Q  7 aatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33618375 aatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttcactc 33618474  T
Q  107 tgtgggttttggacacgacggagctttactttccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618475 tgtgggttttggacacgacggagctttactttccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaatt 33618574  T
Q  207 ggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaactaaacctatctatccttttgttagctaatatattttgtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  33618575 ggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaactaaacctatctatctttttgttagttaatatattttgtg 33618674  T
Q  307 tccctatgaaatatatttttaagttgtttaacatcattgcgtca 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33618675 tccctatgaaatatatttttaagttgtttaacatcattgcgtca 33618718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 33609202 - 33609459
Alignment:
Q  9 tatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctg 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || || || |||||||| |||||||| || ||||    
T  33609202 tatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattctg 33609301  T
Q  109 tgggttttggacacgacggagctttactttccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaattgg 208  Q
    |||| || ||||  ||||| |||||| ||||||||||| |||||||||| ||||||||| |||||||| |||||||||| ||||||||||||||| ||||    
T  33609302 tgggcttgggacgtgacggcgctttaatttccgccattgtacttggatccgttagccttgtgtctaacgttatctctgccggtattgttgatcgatttgg 33609401  T
Q  209 tcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaa 266  Q
    |||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  33609402 tcgaagattcctgttcataactgggggtattatgatgtttgtctgcttggtaagcgaa 33609459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 33588482 - 33588632
Alignment:
Q  5 acaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac 104  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| |||||||||||     
T  33588482 acaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaa 33588581  T
Q  105 tctgtgggttttggacacgacggagctttactttccgccattatacttgga 155  Q
    ||||||||||| ||| || |||| ||||||||||| ||| |||| ||||||    
T  33588582 tctgtgggtttaggaaacaacggtgctttactttctgccgttattcttgga 33588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 33595654 - 33595804
Alignment:
Q  5 acaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac 104  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| |||||||||||     
T  33595654 acaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaa 33595753  T
Q  105 tctgtgggttttggacacgacggagctttactttccgccattatacttgga 155  Q
    ||||||||||| ||| || |||| ||||||||||| ||| |||| ||||||    
T  33595754 tctgtgggtttaggaaacaacggtgctttactttctgccgttattcttgga 33595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 33602785 - 33602935
Alignment:
Q  5 acaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac 104  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| |||||||||||     
T  33602785 acaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaa 33602884  T
Q  105 tctgtgggttttggacacgacggagctttactttccgccattatacttgga 155  Q
    ||||||||||| ||| || |||| ||||||||||| ||| |||| ||||||    
T  33602885 tctgtgggtttaggaaacaacggtgctttactttctgccgttattcttgga 33602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 33627592 - 33627851
Alignment:
Q  9 tatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctg 108  Q
    ||||||||||||||||| |||||  | |||||||||||||| |||||  ||||||||||||||||| | || || |||||||| |||||||||   |||     
T  33627592 tatcgacctcacttggtaatggcgatagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctttagatctt 33627691  T
Q  109 tgggttttggacacgacggagctttactttccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaattgg 208  Q
    |||| || |||||| | |   |||||||||| || |||||||||||   ||||| ||||   |||| |||  ||||| ||  | || |||||||| ||||    
T  33627692 tggggttgggacacaatgcttctttactttctgcgattatacttggcgttgttaaccttgcatctatcctcgtctcttctactgttattgatcgatttgg 33627791  T
Q  209 tcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaact 268  Q
    ||||||||||||||||||  ||||||| ||||| ||| |||||||||||||||| |||||    
T  33627792 tcgaagattcttgttcattactgggggtattatcatgtttgtctgcttggtaagtgaact 33627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 33622758 - 33622824
Alignment:
Q  196 ttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaag 262  Q
    ||||| || ||||||||||||||||||||||| | |||||  |||||||| |||||||||| |||||    
T  33622758 ttgatagatttggtcgaagattcttgttcataaccgggggtgttatgatgtttgtctgctttgtaag 33622824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 33562977 - 33563045
Alignment:
Q  5 acaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacat 73  Q
    |||||||||||||||||||||||| ||| |||| || ||| |||| ||||| || || |||||||||||    
T  33562977 acaatatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacat 33563045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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