View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4466-Insertion-9 (Length: 211)
Name: NF4466-Insertion-9
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 1389770 - 1389972
Alignment:
| Q |
8 |
attttcaggttgaaaaattcgaatattataagcgtctgaaaatgttaatat--taagttgacaaggaataccaagcaataccgtgaagaaataatctccc |
105 |
Q |
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| T |
1389770 |
attttcaggctgaaaaattcgaatattataagcgtctgaaaatgttaatatattaagttgacaaggaataccatgcaataccgtgaagaaataatctccc |
1389869 |
T |
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| Q |
106 |
taattcctagaaaaacaaagaacaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagctaaacgtcatata |
205 |
Q |
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| T |
1389870 |
taattcctagaaaaaccaagaagaatttgtagtaagtcaggaagaatcta---atggcagaatgaaagtgtcataaagagtgaaagctaaacgtcatata |
1389966 |
T |
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| Q |
206 |
taaaat |
211 |
Q |
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| T |
1389967 |
taaaat |
1389972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 4747245 - 4747428
Alignment:
| Q |
14 |
aggttgaaaaattcgaatattataagcgtctgaaaatgttaatattaagttgacaaggaatacc---aagcaataccgtgaagaaataatctccctaatt |
110 |
Q |
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| T |
4747245 |
aggttcaaaaattcaaatattataagcgtcagaaaatgtgaatattaagttgacgagaaataccttgaggcaggaccgtgaagaaataatctccccaatc |
4747344 |
T |
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| Q |
111 |
cctagaaaaacaaagaacaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagctaaacgtc |
200 |
Q |
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| T |
4747345 |
cccagcaatacctacaacagttt---gcaagtcagtaagcatcta---atgggagaacaaaagtgtcataaagagtgaaagctagacgtc |
4747428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 4709417 - 4709458
Alignment:
| Q |
159 |
atgggagaacgaaagtgtcataaagagtgaaagctaaacgtc |
200 |
Q |
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| T |
4709417 |
atgggagatcaaaagtgtcataaagagtgaaagctagacgtc |
4709458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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