View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4466_high_5 (Length: 278)
Name: NF4466_high_5
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466_high_5 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 6163 - 6417
Alignment:
| Q |
1 |
aataattttatgttgcttcttcccttgaaaggtttattttttcactctgattatctcttccactacttgaaatcaataatcaaatgtaataaaaaagttc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||| | | || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
6163 |
aataattttattttgcttcttcacttgcatgcttgattttttcactatgattatctcttccactacttgaaatcaataatcaagtgtaaaaaaaaagttc |
6262 |
T |
|
| Q |
101 |
atgaaaacagagttaggcactacaattaggggtggttgatataagtatcatgttgtggaaaagaaactaagaaatgaaatttatttattaaaaaatgaca |
200 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| |||| |||||||| || ||||||||||| | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
6263 |
atgaaaacataattaggcactacaacgaggggtcgttgcaataagtataattccgtggaaaagaaccgaagaaattaaatttatt--ttaaaaaatgaca |
6360 |
T |
|
| Q |
201 |
tttgagaaattaagttaccaattagcagttgataattgggattccggggagcacttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
6361 |
tttgagaaattaagttaccaattagcagttgataattgggattttgggaagcacttt |
6417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1318 - 1516
Alignment:
| Q |
1 |
aataattttatgttgcttcttcccttgaaaggtttattttttcactctgattatctcttccactacttgaaatcaataatcaaatgtaataaaaaagttc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||| | | || ||||||||||| ||||||||| || ||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
1318 |
aataattttattttgcttcttcacttgcatgcttgattttttcactatgattatctttttcactacttgaaatcaataatcaagtataataaaaatgttc |
1417 |
T |
|
| Q |
101 |
atgaaaacagagttaggcactacaattaggggtggttgatataagtatcatgttgtggaaaagaaactaagaaatgaaatttatttattaaaaaatgaca |
200 |
Q |
| |
|
||||||||| | ||| | |||| ||||||||||| ||||||||| || |||||||||||| | |||||||||||||||||| | |||||| |||| |
|
|
| T |
1418 |
atgaaaacataattacg-----caatcaggggtggttgctataagtataattatgtggaaaagaaccgaagaaatgaaatttattt-taaaaaaaggaca |
1511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 257
Target Start/End: Original strand, 21351285 - 21351449
Alignment:
| Q |
94 |
aaagttcatgaaaacagagttaggcactacaattaggggtggttgatataagtatcatgttgtggaaaagaaactaagaaatgaaatttatttattaa-a |
192 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||| || | |
|
|
| T |
21351285 |
aaagttcgtgaaaacagagttagacactacaatcaggggtggttgctataagtatcatgccgtggaaaagaacctaagaaatgaaaattatttataaaga |
21351384 |
T |
|
| Q |
193 |
aaatgacatttgagaaattaagttaccaattagcagttgataattgggattccggggagcacttt |
257 |
Q |
| |
|
||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
21351385 |
aaaggacatttgaaaaattatgttaccaattagcagttgataattgggattttgggaagcacttt |
21351449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 21351464 - 21351500
Alignment:
| Q |
202 |
ttgagaaattaagttaccaattagcagttgataattg |
238 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21351464 |
ttgagaaattatgttaccaattagcagttgataattg |
21351500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University