View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4466_low_11 (Length: 245)
Name: NF4466_low_11
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47840408 - 47840164
Alignment:
| Q |
1 |
gaatttttctatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatcaaattccgaatctccttggttttcggatacattacaaac |
100 |
Q |
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| T |
47840408 |
gaatttttctatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatcaaattccgaatctccttggttttcggatacattacaaac |
47840309 |
T |
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| Q |
101 |
aaatgtccctctgtctcgatttcattaaagnnnnnnncacaactttgttgatgaatcttattgtcattttctcttgaagcaatcgccaaccaaaaacaca |
200 |
Q |
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| T |
47840308 |
aaatgtccctctgtctcgatttcattaaagaaaaaaacacaactttgctgatgaatcttattgtcattttctcttgaagcaatcgccaaccaaaaacaca |
47840209 |
T |
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| Q |
201 |
aattttttaaggtaccaatgttatcaatagttgtctcacagctgc |
245 |
Q |
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| T |
47840208 |
aattttttaaggtaccaatgttatcaatagttgtctcacagctgc |
47840164 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 26322692 - 26322641
Alignment:
| Q |
10 |
tatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatc |
61 |
Q |
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| T |
26322692 |
tatcaactcttctccccaacctattgcattccacttcatccaattaaaaatc |
26322641 |
T |
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