View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4466_low_13 (Length: 238)
Name: NF4466_low_13
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33921938 - 33921715
Alignment:
| Q |
1 |
aaatgcacgaacgccag-aaaacaactattccacgcatggttgctatcttgtagtaataaaatttcaccatataaattcagttacatgagaaatcattat |
99 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33921938 |
aaatgcacgaacgccaggaaaacaactattccacgcatggttgctaccttgtagtaataaaatttcaccatataaattcagttacatgagaaatcattat |
33921839 |
T |
|
| Q |
100 |
aatttgctggagttcaccatattaataattgnnnnnnnncccaaacaattttaattaacttttgacttcactcttcaataaatggatcagctaaccatgt |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33921838 |
aatttgctggagttcaccatattaataattgttttttttcccaaacaatttaaactaacttttgacttcactcttcaataaatggatcagctaaccatgt |
33921739 |
T |
|
| Q |
200 |
atttccacattatggatttgattt |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33921738 |
atttccacattatggatttgattt |
33921715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 20290926 - 20290704
Alignment:
| Q |
1 |
aaatgcacgaacgccag-aaaacaactattccacgcatggttgctatcttgtagtaataaaatttcaccatataaattcagttacatgagaaatcattat |
99 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20290926 |
aaatgcacgaacgccaggaaaacaactgttccacgcatggttgctaccttgtagtaataaaatttcaccatataaattcagttacatgagaaatcattat |
20290827 |
T |
|
| Q |
100 |
aatttgctggagttcaccatattaataattgnnnnnnnncccaaacaattttaattaacttttgacttcactcttcaataaatggatcagctaaccatgt |
199 |
Q |
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|||||||| ||||||||||||||| |||||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20290826 |
aatttgcttgagttcaccatattagtaattg-tttttttcccaaacaatttaaactaacttttgatttcactcttcaataaatggatcagctaaccatgt |
20290728 |
T |
|
| Q |
200 |
atttccacattatggatttgattt |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
20290727 |
atttccacattatggatttgattt |
20290704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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