View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4466_low_16 (Length: 228)

Name: NF4466_low_16
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4466_low_16
NF4466_low_16
[»] chr7 (21 HSPs)
chr7 (1-110)||(5555467-5555576)
chr7 (1-110)||(3114174-3114283)
chr7 (1-110)||(14777185-14777294)
chr7 (1-106)||(8394109-8394214)
chr7 (1-106)||(36630800-36630905)
chr7 (1-90)||(34389134-34389223)
chr7 (1-90)||(8867809-8867898)
chr7 (1-81)||(35090177-35090257)
chr7 (1-90)||(33685564-33685653)
chr7 (1-71)||(40920081-40920151)
chr7 (1-90)||(37002222-37002311)
chr7 (1-90)||(43184546-43184635)
chr7 (1-84)||(26624751-26624835)
chr7 (1-67)||(38638314-38638380)
chr7 (5-90)||(7002725-7002810)
chr7 (5-90)||(7048596-7048681)
chr7 (15-103)||(26502797-26502885)
chr7 (15-103)||(26589829-26589917)
chr7 (17-72)||(36658199-36658254)
chr7 (45-90)||(10876829-10876874)
chr7 (1-31)||(10868553-10868583)
[»] chr2 (22 HSPs)
chr2 (1-110)||(42439966-42440075)
chr2 (1-110)||(41251712-41251821)
chr2 (1-111)||(35962694-35962804)
chr2 (1-110)||(2958179-2958287)
chr2 (1-110)||(18981597-18981705)
chr2 (1-110)||(32127219-32127328)
chr2 (1-110)||(17445119-17445226)
chr2 (1-110)||(6403882-6403991)
chr2 (1-110)||(16405580-16405689)
chr2 (1-106)||(31581700-31581805)
chr2 (1-87)||(771002-771088)
chr2 (1-90)||(45418583-45418672)
chr2 (1-90)||(8147351-8147440)
chr2 (1-90)||(44084681-44084770)
chr2 (1-84)||(8059411-8059494)
chr2 (15-81)||(7072644-7072710)
chr2 (1-90)||(26237957-26238045)
chr2 (1-72)||(12756915-12756986)
chr2 (1-90)||(4555289-4555377)
chr2 (1-107)||(2285845-2285951)
chr2 (1-71)||(26162777-26162847)
chr2 (15-70)||(34905969-34906024)
[»] chr6 (13 HSPs)
chr6 (1-111)||(34948836-34948946)
chr6 (1-110)||(398597-398706)
chr6 (1-110)||(13837801-13837910)
chr6 (1-90)||(18339106-18339195)
chr6 (1-88)||(29743285-29743372)
chr6 (1-90)||(28996730-28996819)
chr6 (4-90)||(31028445-31028531)
chr6 (1-74)||(33229414-33229487)
chr6 (5-75)||(24697899-24697969)
chr6 (5-75)||(24695502-24695572)
chr6 (15-75)||(3050094-3050154)
chr6 (54-90)||(13647017-13647053)
chr6 (15-62)||(24072576-24072623)
[»] chr5 (22 HSPs)
chr5 (1-107)||(13817960-13818066)
chr5 (1-107)||(10033910-10034016)
chr5 (1-110)||(39434676-39434785)
chr5 (1-110)||(36293699-36293808)
chr5 (1-110)||(3155709-3155818)
chr5 (1-106)||(1776454-1776559)
chr5 (1-110)||(26283396-26283505)
chr5 (1-110)||(39657584-39657693)
chr5 (1-90)||(12278938-12279027)
chr5 (1-72)||(16155015-16155086)
chr5 (1-103)||(19985926-19986028)
chr5 (1-90)||(17332629-17332718)
chr5 (1-90)||(31501794-31501883)
chr5 (1-90)||(31680367-31680456)
chr5 (1-111)||(37254620-37254730)
chr5 (1-76)||(33430335-33430410)
chr5 (1-77)||(28801300-28801376)
chr5 (1-60)||(16333954-16334013)
chr5 (1-71)||(43068896-43068966)
chr5 (1-83)||(36291378-36291460)
chr5 (54-107)||(14316641-14316694)
chr5 (5-77)||(202652-202724)
[»] chr4 (36 HSPs)
chr4 (1-110)||(20129290-20129399)
chr4 (1-110)||(25930688-25930797)
chr4 (1-107)||(17511312-17511417)
chr4 (1-111)||(29319783-29319893)
chr4 (1-111)||(34407362-34407472)
chr4 (1-110)||(26439357-26439466)
chr4 (6-106)||(36382428-36382528)
chr4 (1-111)||(43355883-43355993)
chr4 (1-110)||(13012168-13012277)
chr4 (1-110)||(43143662-43143771)
chr4 (1-110)||(47500753-47500862)
chr4 (1-89)||(42333854-42333942)
chr4 (1-107)||(50205155-50205261)
chr4 (1-90)||(6690313-6690402)
chr4 (1-90)||(30216820-30216909)
chr4 (1-84)||(3292974-3293057)
chr4 (1-107)||(40528996-40529104)
chr4 (1-107)||(10352962-10353068)
chr4 (5-107)||(27363344-27363446)
chr4 (1-88)||(29996061-29996148)
chr4 (1-78)||(48129978-48130055)
chr4 (1-84)||(30109962-30110045)
chr4 (1-82)||(30077709-30077790)
chr4 (1-73)||(44156668-44156740)
chr4 (1-83)||(48989335-48989417)
chr4 (5-73)||(45194193-45194261)
chr4 (1-107)||(6235515-6235609)
chr4 (1-66)||(35545977-35546042)
chr4 (1-84)||(28877328-28877411)
chr4 (5-71)||(26448072-26448138)
chr4 (49-110)||(7769308-7769369)
chr4 (5-65)||(6254569-6254629)
chr4 (53-90)||(49908782-49908819)
chr4 (1-55)||(1817752-1817806)
chr4 (53-90)||(5517494-5517531)
chr4 (5-106)||(20113775-20113876)
[»] chr3 (19 HSPs)
chr3 (1-110)||(6269504-6269613)
chr3 (1-111)||(22968522-22968632)
chr3 (1-110)||(39771770-39771879)
chr3 (1-106)||(34084200-34084305)
chr3 (1-110)||(19390126-19390235)
chr3 (1-110)||(11018290-11018399)
chr3 (1-112)||(6503647-6503758)
chr3 (1-107)||(40081818-40081922)
chr3 (1-90)||(45182981-45183070)
chr3 (1-90)||(6930972-6931061)
chr3 (1-90)||(19565579-19565668)
chr3 (1-81)||(27935187-27935267)
chr3 (33-106)||(22922141-22922214)
chr3 (1-90)||(33040953-33041042)
chr3 (1-82)||(45335883-45335963)
chr3 (1-68)||(5135291-5135358)
chr3 (15-90)||(35514266-35514341)
chr3 (53-83)||(6891005-6891035)
chr3 (41-90)||(5354709-5354758)
[»] chr1 (16 HSPs)
chr1 (1-110)||(7433425-7433534)
chr1 (1-107)||(42311019-42311125)
chr1 (1-113)||(26144232-26144344)
chr1 (111-209)||(16255914-16256012)
chr1 (111-209)||(27902411-27902509)
chr1 (1-103)||(32982134-32982236)
chr1 (1-110)||(23313218-23313328)
chr1 (1-111)||(35907531-35907641)
chr1 (1-107)||(41972353-41972458)
chr1 (1-82)||(321455-321536)
chr1 (1-84)||(3828990-3829073)
chr1 (1-79)||(17445324-17445402)
chr1 (1-90)||(33489687-33489776)
chr1 (5-71)||(35951427-35951493)
chr1 (21-71)||(48901203-48901253)
chr1 (54-90)||(44352614-44352650)
[»] chr8 (14 HSPs)
chr8 (1-107)||(3648872-3648978)
chr8 (1-107)||(29728464-29728570)
chr8 (6-106)||(15838270-15838370)
chr8 (1-84)||(16788103-16788186)
chr8 (1-110)||(34136903-34137012)
chr8 (5-110)||(39914495-39914600)
chr8 (1-90)||(4404008-4404097)
chr8 (1-82)||(36408559-36408640)
chr8 (1-90)||(23402108-23402197)
chr8 (1-74)||(3435285-3435358)
chr8 (1-90)||(2729274-2729363)
chr8 (1-68)||(9877242-9877309)
chr8 (5-75)||(10397122-10397192)
chr8 (5-67)||(40470575-40470637)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-110)||(17822-17931)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-110)||(502-611)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-111)||(480535-480645)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-78)||(31492-31569)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-90)||(5230-5319)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-71)||(52944-53014)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5555576 - 5555467
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5555576 tttctttttgtaaatgcgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtaga 5555477  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  5555476 accgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3114174 - 3114283
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  3114174 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtaga 3114273  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  3114274 accgcccatg 3114283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14777185 - 14777294
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  14777185 tttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtaga 14777284  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  14777285 accgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8394214 - 8394109
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8394214 tttccttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtaga 8394115  T
Q  101 accgcc 106  Q
    ||||||    
T  8394114 accgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36630905 - 36630800
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  36630905 tttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtaga 36630806  T
Q  101 accgcc 106  Q
    ||||||    
T  36630805 accgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34389134 - 34389223
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34389134 tttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 34389223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8867809 - 8867898
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  8867809 tttctttttgtaaatgtattaattggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 35090257 - 35090177
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgccc 81  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  35090257 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33685653 - 33685564
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| ||| |||||    
T  33685653 tttctttttgtaagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgcc 33685564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40920081 - 40920151
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||    
T  40920081 tttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37002222 - 37002311
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| | ||||||| ||| |||||||||||||||||||||||||||| |||  |||||||||||| |||||    
T  37002222 tttctttttgtaagtgtgttaattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgcc 37002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 43184546 - 43184635
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| | ||||||| |||||||||||| ||||| ||| | ||||||||||||||||||||| |||||||||||| ||||||    
T  43184546 tttctttttgtaagtatgttaattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgcc 43184635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26624835 - 26624751
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcg-atcgagcccgggcgaccgcccggg 84  Q
    ||||||||||||| |||||||||   ||||||| ||| ||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  26624835 tttctttttgtaagtgtgttaattaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggg 26624751  T

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Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38638314 - 38638380
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 67  Q
    ||||||||||||| ||||||||| | |||||||||||  |||||||||||||||||||| |||||||    
T  38638314 tttctttttgtaagtgtgttaattgacttttgggttggatctaatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 7002810 - 7002725
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||  ||||||||| ||||||||||||| || ||||||  ||||||  |||||||||||||||||||||| |||| |||||    
T  7002810 tttttgtatgtgtgttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgcc 7002725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 7048681 - 7048596
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||  ||||||||| ||||||||||||| || ||||||  ||||||  |||||||||||||||||||||| |||| |||||    
T  7048681 tttttgtatgtgtgttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgcc 7048596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 26502885 - 26502797
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaacc 103  Q
    ||||||||||||||||||||||| |  |||| ||||||||   ||||||||||||||||||| ||| ||| |||||| ||||| |||||    
T  26502885 tgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtggaacc 26502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 26589829 - 26589917
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaacc 103  Q
    ||||||||||||||||||||||| |  |||| ||||||||   ||||||||||||||||||| ||| ||| |||||| ||||| |||||    
T  26589829 tgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtggaacc 26589917  T

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Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 36658254 - 36658199
Alignment:
Q  17 tgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 72  Q
    ||||||| ||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  36658254 tgttaattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 10876829 - 10876874
Alignment:
Q  45 tgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgcc 10876874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 10868553 - 10868583
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggctttt 31  Q
    |||||||||||||||||||||||||||||||    
T  10868553 tttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42440075 - 42439966
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42440075 tttctttttgtaaatgtgttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtaga 42439976  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  42439975 accgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41251712 - 41251821
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||    
T  41251712 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtaga 41251811  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  41251812 accgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35962804 - 35962694
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  35962804 tttctttttgtaaatgtgttaataagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtaga 35962705  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  35962704 accgcccatgc 35962694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2958179 - 2958287
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||    
T  2958179 tttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaa-ttatcgatcgagcccggacgaccgcccggggtcgccatacggtaga 2958277  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  2958278 accgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18981705 - 18981597
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  18981705 tttctttttgtaaatgttttaatggacttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg-tcgccatacggtaga 18981607  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  18981606 accgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32127219 - 32127328
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  32127219 tttctttttgtaaatgtgttaatgagcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctaga 32127318  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  32127319 accgcccatg 32127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17445119 - 17445226
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| | |||||| ||||||||    
T  17445119 tttctttttgtaaatgtgttaatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtaga 17445216  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  17445217 accgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6403882 - 6403991
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  6403882 tttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 6403981  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  6403982 accgcccatg 6403991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 16405689 - 16405580
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || || ||||| ||||||    
T  16405689 tttctttttataaatgtgttaatgagcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtaga 16405590  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  16405589 accgcccatg 16405580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 31581700 - 31581805
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||||| ||||||||||||| | ||||||||| |||||    
T  31581700 tttctttttgtaaatgtgttaatgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgccatacagtaga 31581799  T
Q  101 accgcc 106  Q
    ||||||    
T  31581800 accgcc 31581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 771088 - 771002
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatc 87  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  771088 tttctttttgtaagtgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatc 771002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45418672 - 45418583
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  45418672 tttctttttgtaagtgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45418583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8147440 - 8147351
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  8147440 tttctttttgtaagtgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgcc 8147351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 44084681 - 44084770
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||||  ||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  44084681 tttctttttgtaagtgtgttaatgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 44084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8059411 - 8059494
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 84  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||| || |||||    
T  8059411 tttctttttgtaagtgtgttaattggcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggg 8059494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 7072644 - 7072710
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgccc 81  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  7072644 tgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26238045 - 26237957
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||||| ||||||| |||  |||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  26238045 tttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaat-atcgatcgagcccgggcgaccgcccggggtcgcc 26237957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12756915 - 12756986
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 72  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  12756915 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccggg 12756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4555289 - 4555377
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| |||||||| | |||||||||||| || | ||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  4555289 tttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtcc-agcgaccgcccgagatcgcc 4555377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2285951 - 2285845
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||| ||| |||||||||||||| | ||||| |||||  | |||||||||||||||||||||||| || |   ||||| ||| ||||||||| |||||||    
T  2285951 tttcctttcgtaaatgtgttaatagactttttggttggatttaatgtgcaaaaattatcgatcgaacctgaatgaccgtccgagatcgccatccggtaga 2285852  T
Q  101 accgccc 107  Q
    |||||||    
T  2285851 accgccc 2285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26162777 - 26162847
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||||||||| |||||||||||| ||||||||||| | ||||||| ||||||||||||  ||||||||    
T  26162777 tttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaattatcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 34906024 - 34905969
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccg 70  Q
    ||||||||||||||||||||||  |  |||||||||||||||||||||||||||||    
T  34906024 tgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34948836 - 34948946
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  34948836 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtaga 34948935  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  34948936 accgcccatgc 34948946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 398706 - 398597
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  398706 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 398607  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  398606 accgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13837910 - 13837801
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||| |||||||||||||||    
T  13837910 tttctttttgtaaatgtgttgatgtgcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtaga 13837811  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  13837810 accgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18339195 - 18339106
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  18339195 tttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29743372 - 29743285
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcg 88  Q
    ||||||| ||||||||||||||||  ||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29743372 tttctttctgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcg 29743285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28996819 - 28996730
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| | ||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  28996819 tttctttttgtaagtgtgttaattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgcc 28996730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 31028445 - 31028531
Alignment:
Q  4 ctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||||| |||||| ||||| |||| |||||    
T  31028445 ctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgcc 31028531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33229414 - 33229487
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcg 74  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  33229414 tttctttttggaaatgtgttaatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24697899 - 24697969
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 75  Q
    ||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcga 24697969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 24695572 - 24695502
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 75  Q
    ||||||||| ||||||||||||||||||||||||| |||||||  |||||| ||||||  |||| ||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgatttagcctgggcga 24695502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 3050154 - 3050094
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 75  Q
    ||||||||||||||||| ||||| |   |||||||||||||||| ||| ||||||||||||    
T  3050154 tgtgttaatgggcttttcggttgcgctcaatgtgcaaaaattattgattgagcccgggcga 3050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 13647053 - 13647017
Alignment:
Q  54 attatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgcc 13647017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 24072623 - 24072576
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgat 62  Q
    |||||||||||| |||||||||   |||||||||||||||||||||||    
T  24072623 tgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 13818066 - 13817960
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  13818066 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtaga 13817967  T
Q  101 accgccc 107  Q
    |||||||    
T  13817966 accgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10034016 - 10033910
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  10034016 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtaga 10033917  T
Q  101 accgccc 107  Q
    |||||||    
T  10033916 accgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39434785 - 39434676
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  39434785 tttcattttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtaga 39434686  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  39434685 accgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 36293699 - 36293808
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||| |||||| ||||||||    
T  36293699 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtaga 36293798  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  36293799 accgcccatg 36293808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3155709 - 3155818
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  3155709 tttctttttataaatgtgttaatggacttttaggttgagtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgataga 3155808  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  3155809 accgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1776454 - 1776559
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||| ||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  1776454 tttctttttgtaaatgtgttaatggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtaga 1776553  T
Q  101 accgcc 106  Q
    ||||||    
T  1776554 accgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26283396 - 26283505
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||| ||    
T  26283396 tttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtgga 26283495  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  26283496 accgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 39657584 - 39657693
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  |||||| | ||| ||||||||  |||||    
T  39657584 tttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgccatatagtaga 39657683  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  39657684 accgcccatg 39657693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12278938 - 12279027
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12278938 tttctttttgtaagtgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgcc 12279027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16155086 - 16155015
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16155086 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 19986028 - 19985926
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| | ||| ||||||||| |    
T  19986028 tttctttttgtaaatgtgctaatggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcgtcatacggtaaa 19985929  T
Q  101 acc 103  Q
    |||    
T  19985928 acc 19985926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17332629 - 17332718
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  17332629 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgcc 17332718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31501794 - 31501883
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  31501794 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgcc 31501883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31680456 - 31680367
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  31680456 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 31680367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37254730 - 37254620
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||||   ||||  |    
T  37254730 tttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaa 37254631  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  37254630 accgcccatgc 37254620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33430410 - 33430335
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 76  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  33430410 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28801376 - 28801300
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 77  Q
    ||||||||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||    
T  28801376 tttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16333954 - 16334013
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcg 60  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16333954 tttctttttgtaaatgtgttaatgggcttttgggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43068966 - 43068896
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  43068966 tttctttttgtaaatgtgttaatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36291460 - 36291378
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgg 83  Q
    ||||||||||||||||||||||||  ||||| ||||   ||||||||||||||||||| |||||| ||||| |||||||||||    
T  36291460 tttctttttgtaaatgtgttaatgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccgg 36291378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 14316694 - 14316641
Alignment:
Q  54 attatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccgccc 107  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  14316694 attatcgatcgagcctgggcgaccgcccgagatcgccatacggtagaaccgccc 14316641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 202724 - 202652
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 77  Q
    ||||||| | ||| ||||||||||||||||||    ||||||| || ||||||||||||||||||||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgacc 202652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20129399 - 20129290
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  20129399 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 20129300  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  20129299 accgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25930797 - 25930688
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  25930797 tttctttttgtaaatgtgttaatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtaga 25930698  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  25930697 accgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17511312 - 17511417
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||    
T  17511312 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgccaggg-tcgccatacggtaga 17511410  T
Q  101 accgccc 107  Q
    |||||||    
T  17511411 accgccc 17511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 29319783 - 29319893
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| || ||||||||||||    
T  29319783 tttctttttgtaaatgtgttaatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtaga 29319882  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  29319883 accgcccatgc 29319893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34407362 - 34407472
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||| ||    
T  34407362 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtgga 34407461  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  34407462 accgcccatgc 34407472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26439357 - 26439466
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||| ||    
T  26439357 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtgga 26439456  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  26439457 accgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 36382428 - 36382528
Alignment:
Q  6 ttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccgc 105  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  36382428 ttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgc 36382527  T
Q  106 c 106  Q
    |    
T  36382528 c 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43355993 - 43355883
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |||| | ||||| ||    
T  43355993 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtgga 43355894  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  43355893 accgcccatgc 43355883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13012277 - 13012168
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  13012277 tttctttttataaatgtgttaatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 13012178  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  13012177 accgcccatg 13012168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 43143662 - 43143771
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||  |    
T  43143662 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaa 43143761  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  43143762 accgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 47500862 - 47500753
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  47500862 tttcttttcataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 47500763  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  47500762 accgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42333854 - 42333942
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 89  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  42333854 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgc 42333942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 50205155 - 50205261
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||  |    
T  50205155 tttctttttgtaagtgtgttaattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaa 50205254  T
Q  101 accgccc 107  Q
    |||||||    
T  50205255 accgccc 50205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6690313 - 6690402
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  6690313 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 6690402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30216820 - 30216909
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30216820 tttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 30216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3292974 - 3293057
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 84  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3292974 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggg 3293057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 40529104 - 40528996
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac--cgcccgggatcgccatacggta 98  Q
    |||||||||||||||||||||||| | |||| |||||||| ||||||||||||||||||||||||| |||| ||||  ||||| || |||||||||||||    
T  40529104 tttctttttgtaaatgtgttaatgagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggta 40529005  T
Q  99 gaaccgccc 107  Q
    |||||||||    
T  40529004 gaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 10352962 - 10353068
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||  |||||  |    
T  10352962 tttccttttgtaaatgtgttaatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaa 10353061  T
Q  101 accgccc 107  Q
    |||||||    
T  10353062 accgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 27363446 - 27363344
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccg 104  Q
    ||||||||| ||||||||||||||||||||||| | ||||| ||||||||   ||||||||||||||||||||||||| | ||||||||||||| |||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  105 ccc 107  Q
    |||    
T  27363346 ccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29996061 - 29996148
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcg 88  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||    
T  29996061 tttcttttcgtaaatgtgttaatggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcg 29996148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48130055 - 48129978
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 78  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  48130055 tttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 30110045 - 30109962
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 84  Q
    ||||||||||||| ||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  30110045 tttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggg 30109962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30077709 - 30077790
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 82  Q
    ||||||||||||||||||||||||  ||||| ||||| ||||||||||||||| |||||||| ||||| |||||||||||||    
T  30077709 tttctttttgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccg 30077790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44156740 - 44156668
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggc 73  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  44156740 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48989417 - 48989335
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgg 83  Q
    ||||||||||||| ||||||||||| |||||| |||| || |||||||||||||||||||||||| |||||  ||||||||||    
T  48989417 tttctttttgtaagtgtgttaatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccgg 48989335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 45194261 - 45194193
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggc 73  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  45194261 tttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggc 45194193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 6235609 - 6235515
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||| |||||||            ||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||    
T  6235609 tttctttttgtaaatgtgttaatggacttttgg------------gtgcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtaga 6235522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35546042 - 35545977
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 66  Q
    ||||||||||||| ||||||||| ||||||||||||| |||| ||| ||||||||| |||||||||    
T  35546042 tttctttttgtaagtgtgttaattggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28877328 - 28877411
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 84  Q
    ||||||||| |||  ||||||||  |||||| |||||| |||||||||||||||||||||||| |||||  |||||||| ||||    
T  28877328 tttctttttataagcgtgttaattagcttttaggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggg 28877411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 26448138 - 26448072
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||||| ||||||||||| ||||||||||   | ||||||||||||||||||||||||| ||||    
T  26448138 tttttgtaagtgtgttaatggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccgg 26448072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  49 caaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccgcccatg 110  Q
    |||||||||||||||||||||||||||||||| ||| |||||  |||||  |||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 6254629 - 6254569
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcga 65  Q
    |||||| || ||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  6254629 tttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

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Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 49908782 - 49908819
Alignment:
Q  53 aattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    |||||||||||||||||||||||||||||||| |||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgcc 49908819  T

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Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1817806 - 1817752
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaat 55  Q
    ||||||||| ||||||| ||||||| ||||||| |||  ||||||||||||||||    
T  1817806 tttctttttataaatgtattaatggacttttggattggatctaatgtgcaaaaat 1817752  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 5517494 - 5517531
Alignment:
Q  53 aattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgcc 5517531  T

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Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 20113876 - 20113775
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccg 104  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||  | ||||||||||| |||  |||||||  | ||||| ||||||  |||| ||||||    
T  20113876 tttttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcgccaggcggtggaaccg 20113777  T
Q  105 cc 106  Q
    ||    
T  20113776 cc 20113775  T

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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6269504 - 6269613
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||    
T  6269504 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtaga 6269603  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  6269604 accgcccatg 6269613  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 22968522 - 22968632
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||    
T  22968522 tttctttttgtaaatgtgttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtaga 22968621  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  22968622 accgcccatgc 22968632  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39771879 - 39771770
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||| ||    
T  39771879 tttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtgga 39771780  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  39771779 accgcccatg 39771770  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 34084200 - 34084305
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  34084200 tttctttttgtaaatgtgttaatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtaga 34084299  T
Q  101 accgcc 106  Q
    ||||||    
T  34084300 accgcc 34084305  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19390235 - 19390126
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||    
T  19390235 tttctttttgtaaatgtgttaatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtaga 19390136  T
Q  101 accgcccatg 110  Q
    ||| ||||||    
T  19390135 acctcccatg 19390126  T

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Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11018290 - 11018399
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||  |||||  |    
T  11018290 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaa 11018389  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  11018390 accgcccatg 11018399  T

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Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 6503647 - 6503758
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||  |||||  |    
T  6503647 tttctttttgtaagtgtgctaattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaa 6503746  T
Q  101 accgcccatgcg 112  Q
    ||||||||||||    
T  6503747 accgcccatgcg 6503758  T

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Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 40081818 - 40081922
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| || | | |||||||||||||||    
T  40081818 tttctttttgtaaatgtgttaatgagcttttgg-ttgagtctaatgttcaaaaattatcgatcgagcccgggcgacctccagag-tcgccatacggtaga 40081915  T
Q  101 accgccc 107  Q
    |||||||    
T  40081916 accgccc 40081922  T

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Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45183070 - 45182981
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  45183070 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45182981  T

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Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6930972 - 6931061
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||| |||||    
T  6930972 tttctttttgtaaatgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 6931061  T

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Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 19565579 - 19565668
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    |||||||||||||||||||||||||  |||| ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  19565579 tttctttttgtaaatgtgttaatggattttttggttgggtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgcc 19565668  T

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Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27935267 - 27935187
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgccc 81  Q
    ||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  27935267 tttctttttgtaagtgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgccc 27935187  T

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Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 22922214 - 22922141
Alignment:
Q  33 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccgcc 106  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

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Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33041042 - 33040953
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||| |||||    
T  33041042 tttctttttgtaagtgtgttaattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgcc 33040953  T

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Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 45335963 - 45335883
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 82  Q
    ||||||||||||||||||||||||  ||||| ||||| |||||||||| ||||||||||||| ||| |||||||||||||||    
T  45335963 tttctttttgtaaatgtgttaatga-ctttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccg 45335883  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5135358 - 5135291
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 68  Q
    ||||||||||||| |||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||    
T  5135358 tttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcc 5135291  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 35514341 - 35514266
Alignment:
Q  15 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||| |||||||||||  |||| | ||| ||||||||||||||||||||| |||||| ||||| |||||    
T  35514341 tgtgttaatggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgcc 35514266  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 6891035 - 6891005
Alignment:
Q  53 aattatcgatcgagcccgggcgaccgcccgg 83  Q
    |||||||||||||||||||||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccgg 6891005  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 5354758 - 5354709
Alignment:
Q  41 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||  |||||||  ||||||||||||||||||||||||| |||||    
T  5354758 ctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgcc 5354709  T

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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7433534 - 7433425
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||    
T  7433534 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtaga 7433435  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  7433434 accgcccatg 7433425  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 42311019 - 42311125
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||    
T  42311019 tttctttttgtaaatgtgttaacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtaga 42311118  T
Q  101 accgccc 107  Q
    |||||||    
T  42311119 accgccc 42311125  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26144344 - 26144232
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  26144344 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 26144245  T
Q  101 accgcccatgcgc 113  Q
    |||||||||||||    
T  26144244 accgcccatgcgc 26144232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 16256012 - 16255914
Alignment:
Q  111 cgcccacgaaccaactcaagagtgcacaacaacacgtcgtcaaccccaacccataaaagatctgagggtcaacgaaaaacggaagatcaccgacgggaa 209  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  16256012 cgcccacgaaccaactcaagagcgcacaacaactcgtcgtcaaccccaaaccataacaaatctgagggtcaacgaaaaacggaagatcaccgacgggaa 16255914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 27902411 - 27902509
Alignment:
Q  111 cgcccacgaaccaactcaagagtgcacaacaacacgtcgtcaaccccaacccataaaagatctgagggtcaacgaaaaacggaagatcaccgacgggaa 209  Q
    |||||||||||||||||||||| |||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27902411 cgcccacgaaccaactcaagagcgcacaacaactcatcgtcaaccccaaaccataacagatctgagggtcaacgaaaaacggaagatcaccgacgggaa 27902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32982134 - 32982236
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  32982134 tttctttttgtaaatatgttaatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtaga 32982233  T
Q  101 acc 103  Q
    |||    
T  32982234 acc 32982236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23313328 - 23313218
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaa-aaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtag 99  Q
    ||||||||||||||||||||||||  |||||  |||||||||||||||||| |||| ||| ||||||||||||| |||||||| ||||||||||||||||    
T  23313328 tttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatcgccatacggtag 23313229  T
Q  100 aaccgcccatg 110  Q
    |||||||||||    
T  23313228 aaccgcccatg 23313218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35907641 - 35907531
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| |||  |||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||   ||||  |    
T  35907641 tttctttttgtaagtgtactaattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaa 35907542  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  35907541 accgcccatgc 35907531  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41972353 - 41972458
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||||||||||||||| || |||||||||||||| ||||   ||||| ||    
T  41972353 tttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctggacggtgga 41972451  T
Q  101 accgccc 107  Q
    |||||||    
T  41972452 accgccc 41972458  T

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Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 321455 - 321536
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 82  Q
    ||||||||||||| ||||||||||| |||||||||||  |||||||  ||||||||||||||||||||||| ||||||||||    
T  321455 tttctttttgtaactgtgttaatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccg 321536  T

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Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3829073 - 3828990
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 84  Q
    ||||||||||||| ||||||||||  ||||||||||| || |||||||||||||||||||||||| |||| ||||||| |||||    
T  3829073 tttctttttgtaagtgtgttaatgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggg 3828990  T

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Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17445402 - 17445324
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgc 79  Q
    ||||||||||||| ||||||||| | |||||||||||  |||||||| |||||||||| |||| |||||||||||||||    
T  17445402 tttctttttgtaagtgtgttaattgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgc 17445324  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33489776 - 33489687
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    |||||||| |||| ||||||||||||||||| | ||||||||||||| ||||||||||||| | | ||||  |||||| ||||| |||||    
T  33489776 tttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcgaacaatcccgaacgaccgtccggggtcgcc 33489687  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 35951427 - 35951493
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||| | |||||||||||||| |||||||    ||||||| |||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccgg 35951493  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 48901203 - 48901253
Alignment:
Q  21 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||||||||||||| | |||||||||| |||||||||||||| |||||    
T  48901203 aatgggcttttgggttgggcctaatgtgcataaattatcgatcgaccccgg 48901253  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 44352614 - 44352650
Alignment:
Q  54 attatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    |||||||||||||||||||||||| |||||| |||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgcc 44352650  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3648872 - 3648978
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  3648872 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtaga 3648971  T
Q  101 accgccc 107  Q
    |||||||    
T  3648972 accgccc 3648978  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29728464 - 29728570
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||    
T  29728464 tttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtaga 29728563  T
Q  101 accgccc 107  Q
    |||||||    
T  29728564 accgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 15838370 - 15838270
Alignment:
Q  6 ttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccgc 105  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  15838370 ttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgc 15838271  T
Q  106 c 106  Q
    |    
T  15838270 c 15838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16788103 - 16788186
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 84  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16788103 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 16788186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34136903 - 34137012
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||  |    
T  34136903 tttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaa 34137002  T
Q  101 accgcccatg 110  Q
    ||| ||||||    
T  34137003 accacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 39914600 - 39914495
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtagaaccg 104  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||    
T  39914600 tttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccg 39914501  T
Q  105 cccatg 110  Q
     |||||    
T  39914500 tccatg 39914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4404097 - 4404008
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4404097 tttctttttgtaagtatgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgcc 4404008  T

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Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36408640 - 36408559
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 82  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36408640 tttctttttgtaaatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 36408559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23402197 - 23402108
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  23402197 tttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgcc 23402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3435358 - 3435285
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcg 74  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3435358 tttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2729274 - 2729363
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||| ||| ||||||||||||||||||| |||  | ||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  2729274 tttctttttataagtgtgttaatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgcc 2729363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9877309 - 9877242
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 68  Q
    ||||||||||||| ||||||||| | ||||||||||  ||||||||||||||||||||| ||||||||    
T  9877309 tttctttttgtaagtgtgttaattgacttttgggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 10397122 - 10397192
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 75  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||| | ||||||||||| ||||||||||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcga 10397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 40470575 - 40470637
Alignment:
Q  5 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 67  Q
    ||||| ||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  40470575 tttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17931 - 17822
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||| ||||||||    
T  17931 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtaga 17832  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  17831 accgcccatg 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 611 - 502
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||    
T  611 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtgga 512  T
Q  101 accgcccatg 110  Q
    ||||||||||    
T  511 accgcccatg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 480535 - 480645
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgccatacggtaga 100  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||    
T  480535 tttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtgga 480634  T
Q  101 accgcccatgc 111  Q
    |||||||||||    
T  480635 accgcccatgc 480645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31569 - 31492
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccg 78  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  31569 tttctttttgtaagtgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccg 31492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5319 - 5230
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcc 90  Q
    ||||||||||||| ||||||||| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  5319 tttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 53014 - 52944
Alignment:
Q  1 tttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 71  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||    
T  53014 tttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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