View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4466_low_2 (Length: 521)

Name: NF4466_low_2
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4466_low_2
NF4466_low_2
[»] chr1 (11 HSPs)
chr1 (19-510)||(46878949-46879448)
chr1 (128-320)||(29922349-29922544)
chr1 (118-299)||(5055917-5056099)
chr1 (372-461)||(29920734-29920823)
chr1 (123-226)||(6850145-6850248)
chr1 (396-461)||(6850642-6850707)
chr1 (401-461)||(3154821-3154881)
chr1 (147-227)||(37285479-37285560)
chr1 (129-227)||(38863434-38863533)
chr1 (265-320)||(3155195-3155250)
chr1 (183-228)||(26733425-26733471)
[»] chr4 (19 HSPs)
chr4 (123-320)||(37385729-37385932)
chr4 (122-320)||(42478121-42478318)
chr4 (123-320)||(31416518-31416717)
chr4 (131-320)||(48513365-48513556)
chr4 (122-320)||(29820148-29820348)
chr4 (132-310)||(52488655-52488836)
chr4 (398-461)||(42477791-42477854)
chr4 (372-461)||(37385383-37385473)
chr4 (122-229)||(53409906-53410013)
chr4 (125-320)||(48473418-48473615)
chr4 (396-461)||(31417009-31417074)
chr4 (396-461)||(52489087-52489152)
chr4 (396-461)||(53409454-53409519)
chr4 (129-226)||(33748237-33748335)
chr4 (396-461)||(48512995-48513060)
chr4 (397-455)||(29819826-29819884)
chr4 (265-320)||(53409817-53409872)
chr4 (86-122)||(28476504-28476540)
chr4 (129-224)||(54453868-54453964)
[»] chr6 (6 HSPs)
chr6 (123-320)||(27335447-27335646)
chr6 (123-320)||(27396187-27396386)
chr6 (147-227)||(18058415-18058496)
chr6 (396-452)||(27335955-27336011)
chr6 (396-452)||(27396695-27396751)
chr6 (123-227)||(7695185-7695290)
[»] chr8 (6 HSPs)
chr8 (122-320)||(9232818-9233020)
chr8 (396-461)||(9233329-9233394)
chr8 (125-205)||(32039052-32039132)
chr8 (129-227)||(30152403-30152502)
chr8 (129-227)||(31664819-31664918)
chr8 (183-227)||(35176397-35176442)
[»] chr3 (8 HSPs)
chr3 (123-320)||(26251182-26251381)
chr3 (396-459)||(49015938-49016001)
chr3 (129-226)||(7944225-7944323)
chr3 (124-228)||(49015465-49015569)
chr3 (129-227)||(19647627-19647726)
chr3 (396-461)||(26250840-26250905)
chr3 (265-320)||(49015592-49015647)
chr3 (284-320)||(24741233-24741269)
[»] chr2 (6 HSPs)
chr2 (130-320)||(34024743-34024936)
chr2 (129-228)||(14360106-14360205)
chr2 (265-316)||(23761098-23761149)
chr2 (144-227)||(7000447-7000531)
chr2 (419-461)||(34025237-34025279)
chr2 (147-224)||(42481219-42481296)
[»] chr7 (2 HSPs)
chr7 (122-229)||(42010683-42010790)
chr7 (397-461)||(42011124-42011188)
[»] chr5 (6 HSPs)
chr5 (147-255)||(32772349-32772461)
chr5 (396-461)||(32771590-32771655)
chr5 (129-227)||(14136402-14136501)
chr5 (129-226)||(11782165-11782263)
chr5 (147-227)||(1463735-1463816)
chr5 (147-226)||(40323394-40323474)
[»] scaffold0006 (1 HSPs)
scaffold0006 (397-461)||(282531-282595)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 46878949 - 46879448
Alignment:
Q  19 tgattaaaatgaagaatacaatatctaaacaatgaaaccgaaaaaagataaattagattgtggcttgttgaagttgtctacgactacttttgcatctaga 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  46878949 tgattaaaatgaagaatacaatctctaaacaatgaaaccgaaaaaagataaattaggttgtggcttgttgaagttgtctacggctacttttgcatctaga 46879048  T
Q  119 tcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtc 218  Q
    ||||| || ||||||||| ||| |||||||||||||||| |||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  46879049 tcaagatttcgtataaaatgaacccatgaaaatattggtccatgatggactaattttttcaatggttagattatatgaatccctaaattttatcatggtc 46879148  T
Q  219 tataaacactctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 318  Q
    ||||||||||||||||||| ||| ||||||||||||||        ||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  46879149 tataaacactctaacccatcttcccttataattttattaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacgtt 46879248  T
Q  319 aa--nnnnnnnnnnnnnnntttggtacagtaatttttgttgttggtattataatt------cggttatcaattatttannnnnnncattgtttttgtaga 410  Q
    ||                 ||||||||||||||||||||||||||||||||||||      |||||||||||||||||       |||||||||||||||    
T  46879249 aattttcttttggaaaaattttggtacagtaatttttgttgttggtattataattcagttacggttatcaattatttatttttttcattgtttttgtaga 46879348  T
Q  411 atcgtcaaattatcctttcaaaaagaataataatagcagtaataataaatattcatggtcactaatacacatataaacatcaacatgcatcaaccttctt 510  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46879349 atcgtcaaattatccattcaaaaagaataataacagcagtaataataaatattcatggtcactaatacacatataaacatcaacatgcatcaaccttctt 46879448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 128 - 320
Target Start/End: Complemental strand, 29922544 - 29922349
Alignment:
Q  128 cgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac 227  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  29922544 cgtataaaatgaatccatggaaatattggttcatgatggaccaattttttcaatggttagattatatgaacccttaaattttatcatggtctataaacac 29922445  T
Q  228 tctaacccatattctcttataattttat---ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
    |||||||||| ||| |||||||||||||            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29922444 tctaacccatcttcccttataattttataaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacggtaa 29922349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 118 - 299
Target Start/End: Complemental strand, 5056099 - 5055917
Alignment:
Q  118 atcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggt 217  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  5056099 atcaaggttccttataaaatgaacccatgaaaatattggtccatgatggaccaa-tttttcaatggttagattatatgaatccctaaatcttatcatggt 5056001  T
Q  218 ctataaacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaa 299  Q
    ||||||||||    ||||||||||||| |||||| ||||||  |       ||||||| ||||||| |||||||||||||||||||    
T  5056000 ctataaacactaaatctaacccatattttcttatcatttta--taaaaaaatcatttttaccctttataattattataatttaaaa 5055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 461
Target Start/End: Complemental strand, 29920823 - 29920734
Alignment:
Q  372 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||||||||||       ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29920823 cggttatcaattatttatttttttcattgtttttgtagaatagtcatattatcctttcaaaaagaataataatagcagtaataataaata 29920734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 6850145 - 6850248
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 222  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||  ||| ||||||||||||| ||||||    
T  6850145 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattagatgagccccaaaattttatcatgatctata 6850244  T
Q  223 aaca 226  Q
    ||||    
T  6850245 aaca 6850248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 6850642 - 6850707
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  6850642 cattgtttttttagaatagtcatattatcctttccaaaagactaataacagcagtaataataaata 6850707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 3154881 - 3154821
Alignment:
Q  401 tttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    ||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  3154881 tttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 3154821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 37285479 - 37285560
Alignment:
Q  147 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| |||||||||| | |||||||||||||||||||||||||    
T  37285479 aaaatattggtccatgatggaccaatttttggtatcattagatcatatgaatccaccaaattttatcatggtctataaacac 37285560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 38863434 - 38863533
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  38863434 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 38863533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 3155250 - 3155195
Alignment:
Q  265 tcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  3155250 tcatttttatcctttataattattttaatttaaaatattacatattgttatggtaa 3155195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 26733471 - 26733425
Alignment:
Q  183 attagattatatgaatcc-ctaaattttatcatggtctataaacact 228  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||    
T  26733471 attagattatatgaacccaccaaattttatcatggtctataaacact 26733425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 123 - 320
Target Start/End: Complemental strand, 37385932 - 37385729
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 222  Q
    |||||||||||||| |||| |||| ||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37385932 ggttccgtataaaatgaattcatggaaatattggtctatgatagaccaattttttcaatgattagattatatgaacccctaaattttatcatggtctata 37385833  T
Q  223 aacactctaacccatattctcttataattttat------ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacg 316  Q
    ||||||||||||||| ||| |||||||| ||||               ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37385832 aacactctaacccatcttcccttataatattataaaaaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacg 37385733  T
Q  317 gtaa 320  Q
    ||||    
T  37385732 gtaa 37385729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 122 - 320
Target Start/End: Complemental strand, 42478318 - 42478121
Alignment:
Q  122 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 221  Q
    ||||||||||||||| ||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||| || || ||||||||||||||||||||    
T  42478318 aggttccgtataaaatgaacccatgaaaatattgattcatgatggatcaattttttcaatgattagattatataaacccttaaattttatcatggtctat 42478219  T
Q  222 aaacactctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
    | ||||||||| |||| ||| |||||||||||| |        ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  42478218 acacactctaatccatcttcccttataatttta-taaaaaaaatcattttcaccctttataattatgataatttaaaatattacatatttttacggtaa 42478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 31416518 - 31416717
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 222  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| ||||| || | |||||||| |||||  || ||||||||||||| ||||||    
T  31416518 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaatttttttaacggttagattacatgaactccaaaattttatcatgatctata 31416617  T
Q  223 aacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 318  Q
    |||||    |||||||||| ||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  31416618 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggt 31416715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 131 - 320
Target Start/End: Complemental strand, 48513556 - 48513365
Alignment:
Q  131 ataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac--- 227  Q
    |||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||       
T  48513556 ataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactca 48513457  T
Q  228 -tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
     |||||||||| ||| ||||| ||||||  |       ||||||| ||||||| |||||||| | ||||||||||||||||||| ||| |||||    
T  48513456 atctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttcatttaaaatattacatattgttatggtaa 48513365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 122 - 320
Target Start/End: Complemental strand, 29820348 - 29820148
Alignment:
Q  122 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 221  Q
    ||||||| | ||||| ||| |||||| |||||||||| ||||| |||||| |||||||| | ||| |||| ||||| ||| ||||||||||||| |||||    
T  29820348 aggttccttgtaaaatgaacccatgagaatattggtttatgatggaccaattttttcaacggttaaattagatgaaccccaaaattttatcatgatctat 29820249  T
Q  222 aaacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 317  Q
    ||||||    |||||||||| |||  |||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  29820248 aaacactcaatctaacccatcttcctttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 29820151  T
Q  318 taa 320  Q
    |||    
T  29820150 taa 29820148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 310
Target Start/End: Original strand, 52488655 - 52488836
Alignment:
Q  132 taaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc-- 229  Q
    ||||| ||||| |||| |||||||||  | ||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||||      
T  52488655 taaaatgaatctatgagaatattggtctaagatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaa 52488754  T
Q  230 --taacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatt 310  Q
      |||||||| ||| ||||| |||||| |        ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  52488755 tttaacccatcttcccttatcatttta-taaaaaaaatcatttttaccctttataattattttaatttaaaatattacatatt 52488836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 461
Target Start/End: Complemental strand, 42477854 - 42477791
Alignment:
Q  398 ttgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42477854 ttgtttttgtagaatagtcatattatcctttcaaaaataataataatagcagtaataataaata 42477791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 461
Target Start/End: Complemental strand, 37385473 - 37385383
Alignment:
Q  372 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttca-aaaagaataataatagcagtaataataaata 461  Q
    |||||||||||||||||       |||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  37385473 cggttatcaattatttatttttttcattgtttttgtagaatcgtcatattatcctttcaaaaaaaaataataataacagtaataataaata 37385383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 53410013 - 53409906
Alignment:
Q  122 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 221  Q
    ||||||| ||||||| ||| |||||| ||||||| || | ||| || ||| |||||||| | |||||||| ||||||||| ||||||||||||| |||||    
T  53410013 aggttccttataaaatgaacccatgagaatattgatttaagatggatcaattttttcaacggttagattaaatgaatcccaaaattttatcatgatctat 53409914  T
Q  222 aaacactc 229  Q
    ||||||||    
T  53409913 aaacactc 53409906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 320
Target Start/End: Original strand, 48473418 - 48473615
Alignment:
Q  125 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaa 224  Q
    |||| ||||||| ||| |||| | |||||||||| | ||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||| ||    
T  48473418 ttccttataaaatgaaaccataagaatattggtttacgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctatgaa 48473517  T
Q  225 cactc----taacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
     ||||    |||||||| ||| ||||| |||||||         ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  48473518 tactcaatctaacccatcttcccttattattttat--aaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggtaa 48473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 31417009 - 31417074
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  31417009 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 31417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 52489087 - 52489152
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  52489087 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 52489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 53409519 - 53409454
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  53409519 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 53409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 33748335 - 33748237
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaaca 226  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  33748335 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccatcaaattttatcatggtctataaaca 33748237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 48513060 - 48512995
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  48513060 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 48512995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 29819884 - 29819826
Alignment:
Q  397 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataa 455  Q
    ||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  29819884 attgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataa 29819826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 53409872 - 53409817
Alignment:
Q  265 tcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  53409872 tcatttttaccctttataattattttaatttaaaatattacatattgttatggtaa 53409817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 28476540 - 28476504
Alignment:
Q  86 ttgaagttgtctacgactacttttgcatctagatcaa 122  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  28476540 ttgaagttgtctacgacaacttttgcatctagctcaa 28476504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 54453868 - 54453964
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaa 224  Q
    |||||||| ||| | || |||||||||||| ||||| || ||| |||||  |  ||||||| ||||||| || | ||||||||||||||||||||||    
T  54453868 gtataaaatgaacctataaaaatattggtttatgatggatcaattttttgtaccattagatcatatgaacccatcaaattttatcatggtctataaa 54453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 27335447 - 27335646
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 222  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27335447 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27335546  T
Q  223 aacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 318  Q
    |||||    |||||||||| ||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27335547 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27335644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 27396187 - 27396386
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 222  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27396187 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27396286  T
Q  223 aacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 318  Q
    |||||    |||||||||| ||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27396287 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27396384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 18058415 - 18058496
Alignment:
Q  147 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    ||||||||||| |||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  18058415 aaaatattggtccatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 18058496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 27335955 - 27336011
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 452  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27335955 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27336011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 27396695 - 27396751
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 452  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27396695 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 7695290 - 7695185
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctat 221  Q
    ||||| |||||||| ||| |||| || ||||||||  ||||| |||||   ||||||||| |||||| |||| || || |||||| ||||||||||| ||    
T  7695290 ggttctgtataaaatgaacccatcaagatattggtcgatgatggaccagtcttttcaatgcttagatcatatcaacccactaaatcttatcatggtccat 7695191  T
Q  222 aaacac 227  Q
    ||||||    
T  7695190 aaacac 7695185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 320
Target Start/End: Original strand, 9232818 - 9233020
Alignment:
Q  122 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 221  Q
    ||||||| ||||||| ||| |||||| ||||||| | |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||    
T  9232818 aggttccttataaaatgaacccatgagaatattgatccatgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctat 9232917  T
Q  222 aaacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 317  Q
    ||||||    |||||||||| ||| ||||| |||||||         ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  9232918 aaacactcaatctaacccatcttcccttatcattttataaaaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 9233017  T
Q  318 taa 320  Q
    |||    
T  9233018 taa 9233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 9233329 - 9233394
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  9233329 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 9233394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 32039132 - 32039052
Alignment:
Q  125 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaa 205  Q
    |||| ||||||| ||| ||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||| ||||||    
T  32039132 ttccttataaaatgaacccatgaaaatattggtttatgatggatcaattttttcaatggttagattatatgaattcctaaa 32039052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 30152502 - 30152403
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    |||||||| ||| |||| || |||||||| |||||| ||||||  ||||||||| ||||||||||| || || |||||| ||| ||||||| ||||||||    
T  30152502 gtataaaatgaacccatcaagatattggtccatgatggaccaatcttttcaatgtttagattatatcaacccactaaatcttaccatggtccataaacac 30152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 31664918 - 31664819
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaacac 227  Q
    |||||||| ||| | || ||||||||||| |||||| || ||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  31664918 gtataaaatgaacctataaaaatattggtccatgatggaacaattttttgtaccattagatcatatgaactcaccaaattttatcatggtctataaacac 31664819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 35176397 - 35176442
Alignment:
Q  183 attagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||    
T  35176397 attagattatatgaatccaccaaattttatcatggtccataaacac 35176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 320
Target Start/End: Complemental strand, 26251381 - 26251182
Alignment:
Q  123 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 222  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||||    
T  26251381 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattaaatgaaccccaaaattttatcatgatctata 26251282  T
Q  223 aacac----tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 318  Q
    |||||    |||||||||| ||| ||||| ||||||  |       ||||||| ||| ||| |||||||| ||||||||||||||||||||| ||| |||    
T  26251281 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccttttataattattttaatttaaaatattacatattgttatggt 26251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 459
Target Start/End: Original strand, 49015938 - 49016001
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaa 459  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  49015938 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaa 49016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 7944225 - 7944323
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 226  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  7944225 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaaca 7944323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 49015465 - 49015569
Alignment:
Q  124 gttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataa 223  Q
    ||||| ||||||| |||||  ||| |||||||||  ||||| |||||| |||||||| | |||||||| ||||| | | ||||||||||||| |||||||    
T  49015465 gttccttataaaatgaatctctgagaatattggtctatgatggaccaattttttcaacggttagattaaatgaacctcaaaattttatcatgatctataa 49015564  T
Q  224 acact 228  Q
    |||||    
T  49015565 acact 49015569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 19647627 - 19647726
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    |||||||| ||| | || ||||||||||| |||||| ||||||||||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  19647627 gtataaaatgaacctataaaaatattggtccatgatggaccaaatttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 19647726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 26250905 - 26250840
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||| ||| |||||||||||    
T  26250905 cattgtttttttagaatagtcatattatcctttccaaaagactaataataacagcaataataaata 26250840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 49015592 - 49015647
Alignment:
Q  265 tcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  49015592 tcatttttatcctttataattattttaatttaaaatattacatattgttatggtaa 49015647  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 24741269 - 24741233
Alignment:
Q  284 ttattataatttaaaatattacatatttttacggtaa 320  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  24741269 ttattataatttaaaatattacatattgttatggtaa 24741233  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 320
Target Start/End: Original strand, 34024743 - 34024936
Alignment:
Q  130 tataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac-- 227  Q
    ||||||| ||| ||||||||||||| ||  || || ||||||  ||||||||  ||||||||||||||||||||||| |||||||| |||||||||||      
T  34024743 tataaaatgaacccatgaaaatatttgtctattatggaccaatattttcaatagttagattatatgaatccctaaatcttatcatgatctataaacacta 34024842  T
Q  228 --tctaacccatattctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 320  Q
      | |||||||| || |||||| |||||| |        ||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  34024843 aatttaacccatcttttcttatcatttta-taaaaaaaatcatttttaccctttataattattataatttaaaatactacatattattactgtaa 34024936  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 14360106 - 14360205
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacact 228  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||| |||||||| | |||||||||||||| | |||||| ||| |||| ||||||||||||    
T  14360106 gtataaaatgaacccatgaaaatattggtccatcatagaccaattttttcaacggttagattatatgaaccactaaatcttaccatgatctataaacact 14360205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 23761098 - 23761149
Alignment:
Q  265 tcattttcaccctttgtaattattataatttaaaatattacatatttttacg 316  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||||    
T  23761098 tcatttttagcctttataattattataatttaaaatattacatattgttacg 23761149  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 7000531 - 7000447
Alignment:
Q  144 atgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatc-cctaaattttatcatggtctataaacac 227  Q
    ||||||||||||||  ||||| |||||| |||||  |  |||||||||||||||||  | ||||||||| |||||||||||||||    
T  7000531 atgaaaatattggtctatgatggaccaattttttgtaccattagattatatgaatctaccaaattttattatggtctataaacac 7000447  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 461
Target Start/End: Original strand, 34025237 - 34025279
Alignment:
Q  419 attatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  34025237 attatactttccaaaagaatagtaatagcagtaataataaata 34025279  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 42481219 - 42481296
Alignment:
Q  147 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaa 224  Q
    ||||||||||| |||||| |||||| ||||| |   ||||||| |||||||||| | ||||||||||||||||||||||    
T  42481219 aaaatattggtccatgatggaccaatttttttacc-attagatcatatgaatccaccaaattttatcatggtctataaa 42481296  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 42010683 - 42010790
Alignment:
Q  122 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 221  Q
    ||||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | ||||| || ||||| ||| ||||||||||||| |||||    
T  42010683 aggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagaatagatgaaccccaaaattttatcatgatctat 42010782  T
Q  222 aaacactc 229  Q
    ||||||||    
T  42010783 aaacactc 42010790  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 42011124 - 42011188
Alignment:
Q  397 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    ||||||||| || ||| |||| ||||||||||| |||||| |||||||||||| |||||||||||    
T  42011124 attgtttttttaaaatagtcatattatcctttccaaaagactaataatagcagcaataataaata 42011188  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 32772461 - 32772349
Alignment:
Q  147 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac----tctaacccatattct 242  Q
    |||||||||||  ||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||    |||||||||| |||     
T  32772461 aaaatattggtctatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaatctaacccatcttcc 32772362  T
Q  243 cttataattttat 255  Q
    ||||| |||||||    
T  32772361 cttatcattttat 32772349  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 32771655 - 32771590
Alignment:
Q  396 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  32771655 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 32771590  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 14136501 - 14136402
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  14136501 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 14136402  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 11782263 - 11782165
Alignment:
Q  129 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 226  Q
    |||||||| ||| | || ||||||||||| |||||| |||||| |||||  |   |||||| ||||||| || | ||||||||||||||||||||||||    
T  11782263 gtataaaatgaacctataaaaatattggtccatgatggaccaattttttgtaccgttagatcatatgaacccaccaaattttatcatggtctataaaca 11782165  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 1463816 - 1463735
Alignment:
Q  147 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 227  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| ||||||| || | ||||||||||||| |||||||||||    
T  1463816 aaaatattggtccatgatggaccaatttttgatatcattagatcatatgaacccaccaaattttatcatgatctataaacac 1463735  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 40323474 - 40323394
Alignment:
Q  147 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaaca 226  Q
    |||||||||||  ||||| |||||| |||||  |  ||||||||||||||| || | |||| |||||||||||||||||||    
T  40323474 aaaatattggtctatgatggaccaattttttgtaccattagattatatgaactcaccaaatcttatcatggtctataaaca 40323394  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 461
Target Start/End: Complemental strand, 282595 - 282531
Alignment:
Q  397 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 461  Q
    ||||||||  |||||| |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  282595 attgttttcttagaatagtcatattatcctttttaaaagactaataatagcagtaataataaata 282531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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