View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4466_low_3 (Length: 425)
Name: NF4466_low_3
Description: NF4466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4466_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 39758706 - 39758314
Alignment:
| Q |
16 |
ggacacaaagagtcagttcaggctcgacctttggtgaatgagactttgcgacaactcgaggccgcggaaagaactatagagttgtcatgaaccaatgctg |
115 |
Q |
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| T |
39758706 |
ggacgcaaagagtcagttcaggctcgacctttggtgaatgagactttgcgacaactcgaggccgcggaaagaactatagagttgtcatgaaccaatgctg |
39758607 |
T |
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| Q |
116 |
gaaaagccgtgcaaagatacaactcctccgctttagactcaaaccattctagaacacacgcgaaatcgagccgtgcacatgatagtaatttggaaattga |
215 |
Q |
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| T |
39758606 |
gaaaatccgtgcaaagatacaactcctccgctttagactcaaaccattctagaacacacgcgaaatcgagccgtgcacatgatggtaatttggaaattga |
39758507 |
T |
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| Q |
216 |
agctgaaagattggaaaagaatgatagtacgaattacattgaaatcgagtttcattctttgaggtctgaggttgaactacttaggtctgcaattgagatt |
315 |
Q |
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| T |
39758506 |
agctgaaagattggaaaagaatgatagtacgaatcacattgaaatcgagtttcattctttgaggtttgaggttgaactacttaggtctgcaattgagatt |
39758407 |
T |
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| Q |
316 |
ggtgaaactaaattacaggaggaaaagattcagaacacaatgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaat |
408 |
Q |
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| T |
39758406 |
ggtgaaactaaattacaggaggaaaagattcagaacacaatgaagataatgaatgcttacgagttgattgaaaggatgaaatcagaatcgaat |
39758314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 184 - 403
Target Start/End: Complemental strand, 39764274 - 39764055
Alignment:
| Q |
184 |
agccgtgcacatgatagtaatttggaaattgaagctgaaagattggaaaagaatgatagtacgaattacattgaaatcgagtttcattctttgaggtctg |
283 |
Q |
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| T |
39764274 |
agccttgcacatgacagaaatttggaaatggaatctgaaagattggaaaagaatgatagtactaatcacattgaaatcgagtttcgttctttgaggtctg |
39764175 |
T |
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| Q |
284 |
aggttgaactacttaggtctgcaattgagattggtgaaactaaattacaggaggaaaagattcagaacacaatgaagataatgaatgcttacgagttgat |
383 |
Q |
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| T |
39764174 |
aggttgaactacttaggtctgcgattgagattgccgaaattaaattccaagaagaacagattcagaacacggtgaagattaggaatgcctatgagttgat |
39764075 |
T |
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| Q |
384 |
tgaaaggatgaaatcagaat |
403 |
Q |
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| T |
39764074 |
cgaacgggtaaaatcagaat |
39764055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 39764401 - 39764332
Alignment:
| Q |
21 |
caaagagtcagttcaggctcgacctttggtgaatgagactttgcgacaactcgaggccgcggaaagaact |
90 |
Q |
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| T |
39764401 |
caaagagtcaaatcaggctcaacctttggtgaacgagactttgcgacaacttgaggcagcgaaaagaact |
39764332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 36927350 - 36927272
Alignment:
| Q |
225 |
attggaaaagaatgatagtacgaattacattgaaatcgagtttcattctttgaggtctgaggttgaactacttaggtct |
303 |
Q |
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| T |
36927350 |
attggaagaaaatgatagtactaatcacatttaaatcgagtttcgttctttgaagtccgagtttgaactactgaggtct |
36927272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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