View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4467-Insertion-1 (Length: 839)
Name: NF4467-Insertion-1
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467-Insertion-1 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 27314684 - 27314403
Alignment:
| Q |
7 |
aacttttaacacactatttacgcgcaaagagttccagccatgcatcgttgtttctccaaacttcaagtgccgcgtgttgctatcagtttgtcagttttct |
106 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27314684 |
aacttttaacgcactatttacgcgcaaagagttccagccatgcatcgttgtttctccaaacttcaagtgccgcgtgttgctatcagtttctcagttttct |
27314585 |
T |
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| Q |
107 |
tctattttaacacattgatgagtagcaactatgggtggttatgaatatcattggtcgttttgtgaaggatttttaggtagtgatgtttattttggtgggt |
206 |
Q |
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|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |
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| T |
27314584 |
tctattttaacacattgatgagtagcaactacgggtgattatgaatatcattggtcgttttgtgaaggatttttaggtactgatgtttattttagtaggt |
27314485 |
T |
|
| Q |
207 |
attgtctggtagggtttgaccagatgt----tgtaggtgccatttatggtgtttatttgaacatagatttgatttttaataa |
284 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||| |||||||||| |
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| T |
27314484 |
gttgtctggtagggtttgaccagatgttgtgtgtaggtgctatttatggtgtttatttgagcagagatttggtttttaataa |
27314403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 12296444 - 12296492
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttg |
224 |
Q |
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||||||||| ||||||||||||||||||||| ||||| ||||||||||| |
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| T |
12296444 |
tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttg |
12296492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 28967135 - 28967185
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
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||||||||| | ||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
28967135 |
tttttaggtggcgatgtttattttggtgggtgttgtcaggtagggtttgac |
28967185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 805 - 837
Target Start/End: Complemental strand, 27313845 - 27313813
Alignment:
| Q |
805 |
atgcaatttatagataaatgatgttgtggtata |
837 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27313845 |
atgcaatttatagataaatgatgttgtggtata |
27313813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 2063119 - 2063198
Alignment:
| Q |
158 |
tggtcgttttgtgaagga-tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgaccagatgttgt |
236 |
Q |
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||||||||| ||||||| ||||||||| |||||||||||||||| |||| ||||| ||||||||||||| || |||||| |
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| T |
2063119 |
tggtcgtttcttgaaggagtttttaggtggtgatgtttattttggcgggtgttgtcaggtagggtttgactaggtgttgt |
2063198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 15126222 - 15126172
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
15126222 |
tttttaggtggtgatgtttattttggtgggtattgtcaggtaggatttgac |
15126172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 15360984 - 15361034
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
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||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
15360984 |
tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgac |
15361034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 13098383 - 13098333
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
13098383 |
tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgac |
13098333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 16180710 - 16180661
Alignment:
| Q |
177 |
ttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
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|
|||||||| ||||||||||||||||||| | ||||| ||||||||||||| |
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| T |
16180710 |
ttttaggtggtgatgtttattttggtggatgttgtcaggtagggtttgac |
16180661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 6827 - 6877
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
6827 |
tttttaggtggtgatgtttattttggtgggtgttgtcaggttgggtttgac |
6877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 48058478 - 48058435
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagg |
219 |
Q |
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||||||||| ||||||||||||||||||||| ||||| |||||| |
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| T |
48058478 |
tttttaggtggtgatgtttattttggtgggtgttgtcaggtagg |
48058435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 27713334 - 27713384
Alignment:
| Q |
176 |
tttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgac |
226 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
27713334 |
tttttaggcggtgatgtttattttggggggtgttgtcaggtagggtttgac |
27713384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 25594366 - 25594308
Alignment:
| Q |
158 |
tggtcgttttgtgaagga----tttttaggtagtgatgtttattttggtgggtattgtc |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |
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|
| T |
25594366 |
tggtcgttttgtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgtc |
25594308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 19598904 - 19598957
Alignment:
| Q |
175 |
atttttaggtagtgatgtttattttggtgggtattgtctggtagggtttgacca |
228 |
Q |
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|||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| |
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| T |
19598904 |
atttttaggtggtgatgttcattttgatgggggttgtcaggtagggtttgacca |
19598957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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