View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4467-Insertion-2 (Length: 745)
Name: NF4467-Insertion-2
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 30244442 - 30244708
Alignment:
| Q |
8 |
aaacctaaccaaagaatgagcaacaggagaaatagttttctccaaagactcaattctcctcaacttcaactccttaacaagagattcactaaccccatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30244442 |
aaacctaaccaaagaatgagcaacaggagaaatagttttctccaaagactcaattctcctcaacttcaactccttaacaagagattcactaaccccatta |
30244541 |
T |
|
| Q |
108 |
tccaaattcaccatcaaaacagttgcagcatttgaagaactcaaattcaaactatccaactcaacttgagaacagaaactaaacctgaaactagaatgaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30244542 |
tccaaattcaccatcaaaacagttgcagcatttgaagaactcaaattcaaactttccaactcaacttgagaacagaaactaaacctgaaactagaatgaa |
30244641 |
T |
|
| Q |
208 |
cagattgtggttctgcattgttcatcaattctgctccacacccaccagactcagctaacaaccatgc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30244642 |
cagattgtggttctgcattgttcatcaattctgctccacacccaccagactcagctaacaaccatgc |
30244708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 337 - 591
Target Start/End: Original strand, 30244771 - 30245025
Alignment:
| Q |
337 |
atgggttcttaacaccaacacatgaaaaaccgaattcccagatcatttttcgcagaaagtgtcgaaatttgaggttgtttttggtgttgttgtggtagtg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30244771 |
atgggttcttaacaccaacacatgaaaaaccgaattcccagatcatttttcgcagaaagtgtcgaaatttgaggttgtttttggtgttgttgtggtagtg |
30244870 |
T |
|
| Q |
437 |
gtggtgtgtgacaattgcagaagatggtgatgaatgtgtgttggaaatgttagtgttggtttctatggtgaaactcattatgaagttatagatcccaaca |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30244871 |
gtggtgtgtgacaattgcagaagatggtgatgaatgtgtgttggaaatgttagtgttggtttctacggtgaaactcattatgaagttatagatcccaaca |
30244970 |
T |
|
| Q |
537 |
aaatgcacagaaatctaggaaatagaaaaagaaagagaaagtacacacttgagtt |
591 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30244971 |
aaatgcacagaaatctaggatatagaaaaagaaagagaaagtacacacttgagtt |
30245025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 627 - 745
Target Start/End: Original strand, 30245067 - 30245190
Alignment:
| Q |
627 |
ttttatggagtgctgaaaaagggaaaggtgctttacttgtgggggtgggagagaattttgtaaagaaggagagataagaagaagg------tatgagtgt |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
30245067 |
ttttatggagtgctgaaaaagggaaaggtgctttacttgtgggg-tgggagagaattttgtaaagaatgagagataagaagaaggtatgactatgagtgt |
30245165 |
T |
|
| Q |
721 |
ctataaataaataaatgtaattgaa |
745 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30245166 |
ctataaataaataaatgtaattgaa |
30245190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University