View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4467-Insertion-3 (Length: 542)
Name: NF4467-Insertion-3
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 39285748 - 39286151
Alignment:
| Q |
7 |
actgtcctggaccgcggctatgacagttggtctccaagccaagccaacccagcaacaatagcatcgcactatgcatcacacttcacgttcctaatccata |
106 |
Q |
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| T |
39285748 |
actgtcctggaccgcggtaatgacagttggtctccaagccaagccaacccagcaacaatagcatcgcactatgcatcccacttcacgttcctaatccata |
39285847 |
T |
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| Q |
107 |
ctacgcgcttttttaactatcctgttccaccgaccccgtgatgtgcgacattgtgcattctcctagatttattatattcctctgttcttgtttgagttag |
206 |
Q |
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| T |
39285848 |
ctacgcgcttttttagctatcctgttccaccgaccccgtgatgtgcgacattgtgcattctcctagatttattatattcctctgttcttgtttgagttag |
39285947 |
T |
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| Q |
207 |
caaaatgattcaaaaagaataatgaggaatatttagatcacaaacatccccataaatgtggtggtgggtgccacgttttagatctactcaggtccatgta |
306 |
Q |
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| T |
39285948 |
caaaatgattcaaaaagaataatgaggaatatttagatcacaaacatccccataaatgtggtggtgggtgccacgttttagatctactcaggtccatgta |
39286047 |
T |
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| Q |
307 |
caacaacctacacgtacaacgaatatatatcaagaaagggaataaatactaacaatcttctactattctctcctaaaaaacaaatttctactattctgtc |
406 |
Q |
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| T |
39286048 |
caacaacctacatgtacaacgaatatatatcaagaaagtgaataaatactaacaatcttctactattctctcctaaaaaacaaatttctactattctgtc |
39286147 |
T |
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| Q |
407 |
tttg |
410 |
Q |
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| T |
39286148 |
tttg |
39286151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 455 - 542
Target Start/End: Original strand, 39286196 - 39286283
Alignment:
| Q |
455 |
gaagtacttctgcatgttgtcctgaggttagcatagtttgttaacatggagtgtattttcccaagaatcgaactcgtgttacagttga |
542 |
Q |
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| T |
39286196 |
gaagtacttctgcatgttgtcctgaggttagcatagtttgttaacatggagtgtattttcccaaagatcgaactcgtgttacagttga |
39286283 |
T |
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