View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4467-Insertion-4 (Length: 531)
Name: NF4467-Insertion-4
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Complemental strand, 32857855 - 32857322
Alignment:
| Q |
8 |
tttactagtgaacacacaattttaacgaccttctttagatacttgaaaagtttgcattctttctgttctcattatctatctaatacccatagcatgaaca |
107 |
Q |
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| T |
32857855 |
tttactaatgaacacacaattttaacgatcttctttagatatttgaaaagtttgcattctttctcttctcattatctatctaatacccatagcatgaaca |
32857756 |
T |
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| Q |
108 |
acctatttggcttcatatacatcttaatgagtttgctcttgctaaaatctaaccaaaacagagcaaaattcattagtaatgtaatgacgtggctcccctt |
207 |
Q |
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| T |
32857755 |
acctatttggcttcatatacatcttaatgagtttgctcttgctaaaatctaaccaaaa----------ttcattagtaatgtaatgacgtggctcccctt |
32857666 |
T |
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| Q |
208 |
caacatttgaccgactaagattcatttttgcttttgatagtgacttagtgagggatatttacgtcaatnnnnnnntttgaggttgatgagtgcgttgtaa |
307 |
Q |
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| T |
32857665 |
caacatttgaccgactaagattcatttttgcttttgatagtgacttagtgaaggatatttacgtcaataaaaaaatttgaggttgatgagtgcgttgtaa |
32857566 |
T |
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| Q |
308 |
agactaaagacacaa-ccctgtcctagagaatattatatatataagaccaaaccatttagtatcaccttacttacttctaaggcaaaccaaatcaaccat |
406 |
Q |
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| T |
32857565 |
agactaaagacacaaaccctgtcctagagaatattatatatataagaccaaaccatttagtaccaccttacttacttctaaggcaaaccaaatcaaccat |
32857466 |
T |
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| Q |
407 |
acaaaaaatctcatctta-------------------tttgcctccaaattttcaaacaacaaaattaaccaatttccctctaaatcatatatatcaata |
487 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32857465 |
acaaaaaatctcatcttatttcattttcttctccttctttgcctccaaattttcaaacaacaaaattaaccaatttccctctaaatcctatatatcaata |
32857366 |
T |
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| Q |
488 |
tttgtcgcaatggcaacatttactcaaaaaatggcaatacgtta |
531 |
Q |
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| T |
32857365 |
tttgtcgcaatggcaacatttactcaaaaaatggcaatacgtta |
32857322 |
T |
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