View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4467-Insertion-5 (Length: 277)
Name: NF4467-Insertion-5
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 25915555 - 25915824
Alignment:
| Q |
8 |
agaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacaggg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25915555 |
agaatagaagtaattgcgaagtgccaaccagttaatagtaccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacaggg |
25915654 |
T |
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| Q |
108 |
aaacattgaatgtttctccatgaatcatcccccatgctgagaactttcaccacacttgttccatcaacactctccactgtgaacgctattaccttataag |
207 |
Q |
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| T |
25915655 |
aagcattgaatgtttctccatgaatcatcccccatgctgagaactttcaccacacttgttccataaacactctccactatgaacgctattaccttataag |
25915754 |
T |
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| Q |
208 |
ttttagtcaaagtatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttctaaa |
277 |
Q |
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| T |
25915755 |
ttttactcaaagtatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttctaaa |
25915824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 25901538 - 25901804
Alignment:
| Q |
9 |
gaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacaggga |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||| |
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| T |
25901538 |
gaatagaagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacaggga |
25901637 |
T |
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| Q |
109 |
aacattgaatgtttctccatgaatcatcccccatgctgagaactttcaccacacttgttccatcaacactctccactgtgaacgctattaccttataagt |
208 |
Q |
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| T |
25901638 |
aacattgaatgtttctccatgaatcatcctccatgctgagaactttcaccacacttgttccatcaacactctccactatgaacgctagtaccttataagt |
25901737 |
T |
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| Q |
209 |
tttagtcaaagtatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttcta |
275 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901738 |
tttactcaaaatatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttcta |
25901804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 10553804 - 10553963
Alignment:
| Q |
8 |
agaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacaggg |
107 |
Q |
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|||||||||||||| |||||| | |||||||||||| || ||| |||| || ||||| | | |||| ||||| | |||||| ||||| |||||||| ||| |
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| T |
10553804 |
agaatagaagtaatcgcgaagggtcaaccagttaattgtaccattcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacgggg |
10553903 |
T |
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| Q |
108 |
aaacattgaatgtttctccatgaatcatcccccatgctgagaactttcaccacacttgtt |
167 |
Q |
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||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||| |
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| T |
10553904 |
aaacattgaatgtttctccatgaattatccgccatgttgaatactttcaccacacttgtt |
10553963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 10571534 - 10571693
Alignment:
| Q |
8 |
agaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacaggg |
107 |
Q |
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|||||||||||||| |||||| | || ||||||||| || |||||||| || ||||| | | |||| ||||| | |||||| ||||| |||||||| ||| |
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| T |
10571534 |
agaatagaagtaatcgcgaagggtcatccagttaattgtaccactcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacgggg |
10571633 |
T |
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| Q |
108 |
aaacattgaatgtttctccatgaatcatcccccatgctgagaactttcaccacacttgtt |
167 |
Q |
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||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||||||||| |
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| T |
10571634 |
aaacattgaatgtttctccttgaattatccgccatgttgaatactttcaccacacttgtt |
10571693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 10460427 - 10460318
Alignment:
| Q |
15 |
aagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacagggaaacatt |
114 |
Q |
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||||||| | |||| ||||||||| ||||||| ||| |||| || ||||| | | |||||||||||| || ||||||||| |||| ||||| ||||||| |
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| T |
10460427 |
aagtaatcgtgaagggccaaccagctaatagtaccattcaaatacacaccgttgttcttatcacgataaatccaataaagtggaataacaggtaaacatt |
10460328 |
T |
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| Q |
115 |
gaatgtttct |
124 |
Q |
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|||| ||||| |
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| T |
10460327 |
gaatatttct |
10460318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 10481914 - 10481844
Alignment:
| Q |
90 |
taaaggggaagcacagggaaacattgaatgtttctccatgaatcatcccccatgctgagaactttcaccac |
160 |
Q |
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||||| ||||||||||| ||||||||||| |||||||| ||| ||||| ||| |||| |||||||||||| |
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| T |
10481914 |
taaagtggaagcacaggaaaacattgaatatttctccaacaattatccctcatactgaaaactttcaccac |
10481844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 8443884 - 8443937
Alignment:
| Q |
189 |
aacgctattaccttataagttttagtcaaagtatcataaccaaaagagaactta |
242 |
Q |
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|||||||| ||||||||||||| ||||||| ||| ||||||||| |||||||| |
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| T |
8443884 |
aacgctatcaccttataagtttcagtcaaataatcgtaaccaaaaaagaactta |
8443937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 10460238 - 10460190
Alignment:
| Q |
198 |
accttataagttttagtcaaagtatcataaccaaaagagaacttaaaat |
246 |
Q |
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||||||||||||| |||| || ||||||||||||||| |||||||||| |
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| T |
10460238 |
accttataagtttcagtcgaattatcataaccaaaagcaaacttaaaat |
10460190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 25376908 - 25376860
Alignment:
| Q |
16 |
agtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacacc |
64 |
Q |
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||||||||||||| ||||||||| ||||||| |||||||| || ||||| |
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| T |
25376908 |
agtaattgcgaagggccaaccaggtaatagtaccactcaaatacacacc |
25376860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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