View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4467_high_2 (Length: 264)
Name: NF4467_high_2
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 41675583 - 41675737
Alignment:
| Q |
100 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
199 |
Q |
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| T |
41675583 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
41675682 |
T |
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| Q |
200 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtg |
254 |
Q |
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| T |
41675683 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtg |
41675737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41675484 - 41675516
Alignment:
| Q |
1 |
ttagatttcacatgtattgttgcatcttggaca |
33 |
Q |
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| T |
41675484 |
ttagatttcacatgtattgttgcatcttggaca |
41675516 |
T |
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