View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4467_high_4 (Length: 238)
Name: NF4467_high_4
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467_high_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 51552353 - 51552133
Alignment:
| Q |
18 |
agacacaatagcaagagaattgctaacaaattccctagaaccctgaaacaatttctgaagatcagtcttcaattttccatcaggaaaaccatcaacgcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51552353 |
agacacaatagcaagagaattgctaacaaattccctagaaccctgaaacaatttctgaagatcagtcttcaattttccatcaggaaaaccatcaacgcaa |
51552254 |
T |
|
| Q |
118 |
gtttcttggaaagtgataacagcacttaaccaactgttcaagtcaggtgtttttgaagaaagttttttcatgtcagcttcactaagttgatcaatagagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51552253 |
gtttcttggaaagtgataacagcacttaaccaactgttcaagtcaggtgtttttgaagcaagttttttcatgtcagcttcactaagttgatcaatagagg |
51552154 |
T |
|
| Q |
218 |
tagctaaatcatccttagcgt |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
51552153 |
tagctaaatcatccttagcgt |
51552133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University