View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4467_low_6 (Length: 237)
Name: NF4467_low_6
Description: NF4467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4467_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41675375 - 41675155
Alignment:
| Q |
1 |
taaaatcttgctttctgttccttagctaaattggtgcattttcgacctattgaagaagggtttttctgtgagaagcttctttgaagattgcatttggagg |
100 |
Q |
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| T |
41675375 |
taaaatcttgctttctgttccttagctaaattggtgcattttcgacctattgaagaagggtttttctgtgagaagcttctttgaagattgcatttggagg |
41675276 |
T |
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| Q |
101 |
aagaagaagaactccttaggagtgaagagtttgaagttgagcttcttgttgaggaactccttgagaacaatgacttggaacttgtctttctcttctcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675275 |
aagaagaagaactccttaggagtgaagagtttgaagtagagcttcttgttgaggaactccttgagaacaatgacttggaacttgtctttctcttctcatc |
41675176 |
T |
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| Q |
201 |
cataagaaattgtatagtaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41675175 |
cataagaaattgtatagtaat |
41675155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24067164 - 24067124
Alignment:
| Q |
1 |
taaaatcttgctttctgttccttagctaaattggtgcattt |
41 |
Q |
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|||||||||||||||||||| || |||| |||||||||||| |
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| T |
24067164 |
taaaatcttgctttctgttctttggctatattggtgcattt |
24067124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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