View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4468-Insertion-2 (Length: 538)

Name: NF4468-Insertion-2
Description: NF4468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4468-Insertion-2
NF4468-Insertion-2
[»] chr6 (1 HSPs)
chr6 (8-538)||(30575604-30576135)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Complemental strand, 30576135 - 30575604
Alignment:
Q  8 tacgacaacaaagtcattcattctcggcaagcacagattcggaccagatctgtatgtcgtggttgggaaagtttttcctttcatatgactctatcaaaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  30576135 tacgacaacaaagtcattcattctcggcaagcacagattcggaccagatctgtatgtcgcagttgggaaagtttttcctttcatatggctctatcaaaaa 30576036  T
Q  108 tgtacaatgtggttgaactttctgctcttggaattggtagttgtttttgctcaacatttatatgaatttcaggtatatttttcactcgattgctcactgt 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30576035 tgtacaatgcggttgaactttctgctcttggaattggtagttgtttttgctcaacatttttatgaatttcaggtatatttttcactcgattgctcactgt 30575936  T
Q  208 tccggccttactaattctattgtagtatttgtattacatt---acactgttagagatttgtggataggtgtgaatgtcactatttctccacagtttttgc 304  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30575935 tccggccttactaattctattgtagtatttgtattacattcaaacactgttagagatttgtggataggtgtgaatgtcactatttctcca--gtttttgc 30575838  T
Q  305 tatttttcccatttcgttctttccggcactgtcaagtgtcaactgatatttcttccttttgatttcttattcttttgtttccaccatctctgtggaataa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30575837 tatttttcccatttcgttctttccggcactgtcaagtgtcaactgatatttcttccttttgatttcttattcttttgtttccaccatctctgtggaataa 30575738  T
Q  405 gaaccaagtgtattttttgactgagttaccgtgttttctaattcatgtgagaaatgttttaccgtatccttggttgggttgtcactattaatgccgttgg 504  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30575737 gaaccaagtgtattttttgactgagttactgtgttttcaaattcatgtgagaaatgttttaccgtatccttggttgggttgtcactattaatgccgttgg 30575638  T
Q  505 tttggtcacatatttctttgcctttcgtacatta 538  Q
    ||||||||||||||||||||||| ||| ||||||    
T  30575637 tttggtcacatatttctttgcctctcgcacatta 30575604  T

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