View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4468-Insertion-3 (Length: 414)
Name: NF4468-Insertion-3
Description: NF4468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4468-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 160 - 414
Target Start/End: Original strand, 2397354 - 2397610
Alignment:
| Q |
160 |
atttctcatccgttatctatatgtggtttaaggtaaaatagagaataaatatttttggat-attcatatgatctttaacgatcttcttaatatatctttg |
258 |
Q |
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| T |
2397354 |
atttctcatccattatctatgtgtgctttaaggtaagatagagaataaatatttttggatcattcatatgatgtttaacgatcttcttaatatatctttg |
2397453 |
T |
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| Q |
259 |
ggtttcacgaagttacttacaactatgctccactatacaaagtctggtctcacacactcaaaattctatcacacctttactacttttagtacacttttct |
358 |
Q |
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| T |
2397454 |
tgtttcacgaagttaattacaactatgttccactatacaaagtatggtttcacatactcaaaatactatcacacctttactacttttcgcacatttttct |
2397553 |
T |
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| Q |
359 |
tcctcatttctccca-tgatttaaatgttgaagtatctagcttgttttataggtcca |
414 |
Q |
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| T |
2397554 |
tcctcatttcttccattgatttaaatgttgaagtatctcacttattttataggtcca |
2397610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 2397301 - 2397452
Alignment:
| Q |
9 |
aaacatagtagaaataagggagagagttgttacaaaatatttgtaaaaatatcatttctcatccgttatctatatgtggtttaaggtaagatagagaata |
108 |
Q |
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| T |
2397301 |
aaacatagtagaaatatgggagagagttgttacaaaatatttgtacaaatatcatttctcatccattatctatgtgtgctttaaggtaagatagagaata |
2397400 |
T |
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| Q |
109 |
aatatttttggat-attcatatgatctttaacgatcttcttaatatatcttt |
159 |
Q |
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| T |
2397401 |
aatatttttggatcattcatatgatgtttaacgatcttcttaatatatcttt |
2397452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 33656731 - 33656698
Alignment:
| Q |
35 |
ttgttacaaaatatttgtaaaaatatcatttctc |
68 |
Q |
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| T |
33656731 |
ttgttacaaaatatttgtacaaatatcatttctc |
33656698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 34134807 - 34134844
Alignment:
| Q |
33 |
agttgttacaaaatatttgtaaaaatatcatttctcat |
70 |
Q |
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| T |
34134807 |
agttgttacaaaatggttgtaaaaatatcatttctcat |
34134844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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