View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4468-Insertion-4 (Length: 350)
Name: NF4468-Insertion-4
Description: NF4468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4468-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 31321440 - 31321785
Alignment:
| Q |
6 |
caagttgctcttttccattgcaagatctaaaacccctttttctgacgtaaagaaaaatccatatctttttggtgtaaatggagggtttgtggttcttnnn |
105 |
Q |
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| T |
31321440 |
caagttgctcttttcaattgcaagatctaaaaaccctttttctgacgtaaagaaaaatccatatctttttggtgtaaatggagggtttgtggttcttaaa |
31321539 |
T |
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| Q |
106 |
nnnntacattaacttgcacctcataaaaagtgaaatacatcaacttgcttatgg-attggaatttagaacttagtaagttggaattagaaatcacattaa |
204 |
Q |
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| T |
31321540 |
aaaatacattaacttgcacctcataaaaagtgaattacatcaacttgcttatgggattggaatttagaacttagtaagttggaattaggaatcacattaa |
31321639 |
T |
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| Q |
205 |
cttgtatttatagcaaatacactataaatacaaaattgagaagtctgattagacacacaaaaattacataaatttacaaggtatgtgtagtggttagttc |
304 |
Q |
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| T |
31321640 |
cttgtatttatagcaaatacactataaatacagtattgagaagtctgattagacacacaaaaattacataaatttacaaggtatgtgtagtggttagttc |
31321739 |
T |
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| Q |
305 |
ctagaggaggtgggtattgtcacggtacgcgtttttcatcatgctc |
350 |
Q |
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| T |
31321740 |
ctagaggaggtgggtattgtcatggtaggcgtttttcatcatgctc |
31321785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 31322182 - 31322222
Alignment:
| Q |
9 |
gttgctcttttccattgcaagatctaaaacccctttttctg |
49 |
Q |
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| T |
31322182 |
gttgctcttttccattgcaagatctaaaacccctttttctg |
31322222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 2131816 - 2131905
Alignment:
| Q |
183 |
ttggaattagaaatcacattaacttgtatttatagcaaatacactataaatacaaaattgagaagtctgattagacacacaaaaattaca |
272 |
Q |
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| T |
2131816 |
ttggaattagcaatcacatcgacttgtatttattgtaaatacatcataaatacagctttgtgtagtctcataagacacacataaattaca |
2131905 |
T |
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