View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4468-Insertion-5 (Length: 85)

Name: NF4468-Insertion-5
Description: NF4468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4468-Insertion-5
NF4468-Insertion-5
[»] chr7 (3 HSPs)
chr7 (8-85)||(43063474-43063551)
chr7 (20-81)||(26248561-26248622)
chr7 (19-70)||(8049829-8049880)
[»] chr2 (2 HSPs)
chr2 (17-81)||(16422965-16423029)
chr2 (17-81)||(16243941-16244005)
[»] chr4 (4 HSPs)
chr4 (18-71)||(26468342-26468395)
chr4 (17-81)||(23631281-23631345)
chr4 (17-81)||(18899726-18899790)
chr4 (21-68)||(6585648-6585695)
[»] chr1 (3 HSPs)
chr1 (15-71)||(14603849-14603905)
chr1 (17-80)||(27316949-27317012)
chr1 (17-68)||(32808457-32808508)
[»] chr3 (1 HSPs)
chr3 (17-76)||(10936628-10936687)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-30
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 43063551 - 43063474
Alignment:
Q  8 tattattcgtcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctcaatcga 85  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  43063551 tattattcgtcaattgaactaaaatatgatacttcaagacaaattagttcttcattatttacttgaattctcaatcga 43063474  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 26248622 - 26248561
Alignment:
Q  20 attgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctcaa 81  Q
    ||||||||||||| |  ||||||| ||| ||||||||||||||||||||||| |||||||||    
T  26248622 attgaactaaaatatcgtactttaggaccaattagttcttcattatttactcaaattctcaa 26248561  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 8049829 - 8049880
Alignment:
Q  19 aattgaactaaaatgtgatactttaagacaaattagttcttcattatttact 70  Q
    |||||||||||||| || |||||||  || ||||||||| ||||||||||||    
T  8049829 aattgaactaaaatatgttactttagaaccaattagttcatcattatttact 8049880  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 16423029 - 16422965
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctcaa 81  Q
    |||||||||||||||| || ||||| | ||| |||||||| |||||||||||||| |||||||||    
T  16423029 tcaattgaactaaaatatggtacttcaggaccaattagttattcattatttactcaaattctcaa 16422965  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 16243941 - 16244005
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctcaa 81  Q
    |||||||||||||||| || || || || || |||||||| |||||||||||||| |||||||||    
T  16243941 tcaattgaactaaaatatggtatttcaaaaccaattagttattcattatttactccaattctcaa 16244005  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26468342 - 26468395
Alignment:
Q  18 caattgaactaaaatgtgatactttaagacaaattagttcttcattatttactc 71  Q
    ||||||||||||||| || ||||| | ||| |||||||||||||||||||||||    
T  26468342 caattgaactaaaatatggtacttcatgaccaattagttcttcattatttactc 26468395  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 23631281 - 23631345
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctcaa 81  Q
    |||||||||||||||| || ||||| | ||| ||||| ||||||||||||||||| |||| ||||    
T  23631281 tcaattgaactaaaatatggtacttcatgaccaattaattcttcattatttactcaaattttcaa 23631345  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 18899726 - 18899790
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctcaa 81  Q
    |||||||||||||||| || || || | ||| |||| |||||||||||||||||| |||| ||||    
T  18899726 tcaattgaactaaaatatggtatttcaggaccaatttgttcttcattatttactcaaattatcaa 18899790  T

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Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 6585648 - 6585695
Alignment:
Q  21 ttgaactaaaatgtgatactttaagacaaattagttcttcattattta 68  Q
    |||||||||||| || ||||| | ||| ||||||||||||||||||||    
T  6585648 ttgaactaaaatttggtacttcaggaccaattagttcttcattattta 6585695  T

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Target: chr1 (Bit Score: 33; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 14603905 - 14603849
Alignment:
Q  15 cgtcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactc 71  Q
    ||||||| |||||||||| || ||||| ||||| |||||||| ||||||||||||||    
T  14603905 cgtcaatcgaactaaaatatggtacttcaagaccaattagtttttcattatttactc 14603849  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 27317012 - 27316949
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaattctca 80  Q
    |||||||||||||| | || ||||| | ||| ||||||||||||||||||||||  ||||||||    
T  27317012 tcaattgaactaaagtatggtacttcaggaccaattagttcttcattatttactaaaattctca 27316949  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 32808508 - 32808457
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattattta 68  Q
    |||||| ||||||||| || || || ||||| ||||||||||||||||||||    
T  32808508 tcaattaaactaaaatatggtatttcaagaccaattagttcttcattattta 32808457  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10936687 - 10936628
Alignment:
Q  17 tcaattgaactaaaatgtgatactttaagacaaattagttcttcattatttactcgaatt 76  Q
    |||||||||||||||| || ||||| |  |  ||||||||||||||||||||||| ||||    
T  10936687 tcaattgaactaaaatatggtacttcagaatcaattagttcttcattatttactcaaatt 10936628  T

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