View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4468_low_1 (Length: 348)
Name: NF4468_low_1
Description: NF4468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4468_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 18106565 - 18106679
Alignment:
| Q |
109 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgcattatttctacaaaattg |
208 |
Q |
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| T |
18106565 |
tagttagttctatcttttgtcgtagacggccttgatattgtt-agtagtattattattttggcgatacacatatttgactgcattatttctacaaaattg |
18106663 |
T |
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| Q |
209 |
aagatttatcttagtt |
224 |
Q |
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||| |||||||||||| |
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| T |
18106664 |
aagctttatcttagtt |
18106679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 18106881 - 18106971
Alignment:
| Q |
251 |
aatgttagatgaactcaattgtaggtttcattccagtcttgtgtgttcctttgcaaaccggcattataccttctccatgtagggggtcttcat |
343 |
Q |
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| T |
18106881 |
aatgttagatgaactcaattataggtttcatttcggtct-gtgtgttcctttgcacaccggcattataccttttctatgt-gggagtcttcat |
18106971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 37876099 - 37876180
Alignment:
| Q |
109 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
190 |
Q |
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| T |
37876099 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
37876180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 37879093 - 37879026
Alignment:
| Q |
7 |
ttttgactataaaagtttgaaacttcccttggtgaattgaatttgagtaacatatttttgctagaata |
74 |
Q |
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| T |
37879093 |
ttttgactataaaagtttgaaactttccttggtgaattgaatttgagtaacatatttttgctagaata |
37879026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 37876210 - 37876305
Alignment:
| Q |
251 |
aatgttagatgaactcaattgtag---gtttcattcca--gtcttgtgtgttcctttgcaaaccggcattataccttctccatgtagggggtcttcat |
343 |
Q |
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| T |
37876210 |
aatgttagatgaactcaattgtagtaggtttcattctatggtct-gtgtgttcctttgcaaaccggcattataccttctccatgt-gggggtcttcat |
37876305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 23895582 - 23895501
Alignment:
| Q |
109 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
190 |
Q |
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| T |
23895582 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
23895501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 23895471 - 23895376
Alignment:
| Q |
251 |
aatgttagatgaactcaattgtag---gtttcattcca--gtcttgtgtgttcctttgcaaaccggcattataccttctccatgtagggggtcttcat |
343 |
Q |
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| T |
23895471 |
aatgttagatgaactcaattgtagtaggtttcattctatggtct-gtgtgttcctttgcaaaccggcattataccttctccatgt-gggggtcttcat |
23895376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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