View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469-Insertion-10 (Length: 300)
Name: NF4469-Insertion-10
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 36396712 - 36397001
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36396712 |
gttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttctggaattctatcaatcaacc |
36396811 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttcattaacacaatcac--agaaatatcactagtgctgt |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
36396812 |
aaaatgggaatctagaactccaccacaaccttagcaccattccaatttggtccactaatgtttcattaacactatcacaaagaaatatcactagtgctgt |
36396911 |
T |
|
| Q |
206 |
tatagtaaaattaacagacatagcaaacattgttctgatgataaacaacac-aaaactgtcatttggggaagctttgatcaatcccacaga |
295 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| |
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| T |
36396912 |
tatagcaaaattaacagacaaagcaaacattgttctgatgataaacaacacaaaaactgtcatttgggaaagctttgatc-atcccacaga |
36397001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 36410962 - 36411140
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36410962 |
gttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttctggaattctatcaatcaacc |
36411061 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttcattaacacaatcaca |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
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| T |
36411062 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtctaccaatgtttcattaacacagtcaca |
36411140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 36416293 - 36416471
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36416293 |
gttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttctggaattctatcaatcaacc |
36416392 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttcattaacacaatcaca |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
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| T |
36416393 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtctaccaatgtttcattaacacagtcaca |
36416471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 36403645 - 36403934
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
|
|||||||| |||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||| || ||| |
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| T |
36403645 |
gttggaatttggtactacaatttgccaatccaaactgttgtttgggttgcaaacagagatgctcccatcaatgacacttctgggattttatccattgacc |
36403744 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttcattaacacaatcac--agaaatatcactagtgctgt |
205 |
Q |
| |
|
|||||| ||||||| | | |||||||||| ||||||||||||||||||||| || |||||||||| ||||||||| ||||||| ||| | |||||| |
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|
| T |
36403745 |
caaatggaaatctagtaattcaccacaaccatagcaccattcccatttggtctaccgatgtttcatttccacaatcacaaagaaatagcaccaatgctgt |
36403844 |
T |
|
| Q |
206 |
tatagtaaaattaacagacatagcaaacattgttctgatgataaacaacac-aaaactgtcatttggggaagctttgatcaatcccacaga |
295 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
36403845 |
tatagcgaaattatcagacatagcaaaccttgttctgatgataaacaacacaaaaactgtcatctgggaaagctttgatc-atcccacaga |
36403934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 36 - 186
Target Start/End: Original strand, 36425156 - 36425306
Alignment:
| Q |
36 |
tccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaactccaccacaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
36425156 |
tccaaactgttgtttgggttgcaaatagtgatgctcccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaa |
36425255 |
T |
|
| Q |
136 |
ccttagcaccattcccatttggtccactaatgtttcattaacacaatcaca |
186 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| ||||| |
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|
| T |
36425256 |
acttagcaccattcccatttggtctaccaatgtttcattaacacattcaca |
36425306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 36386929 - 36387208
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
|
|||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||| || ||| | ||| | ||||| |||||| ||||| || ||| |
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| T |
36386929 |
gttggaatttggtactacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacaatacttccggaattttatca-tcgacc |
36387027 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttcattaacacaatcac--agaaatatcactagtgctgt |
205 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||| | ||||||| ||||||| |||||||||||| |
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|
| T |
36387028 |
caaatggaaatctagtactccaccacaacctaagcaccattcccatttggtctaccaatgtttcattcccgcaatcacaaagaaatagcactagtgctgt |
36387127 |
T |
|
| Q |
206 |
tatagtaaaattaacagacatagcaaacattgttctgatgataaacaaca-caaaactgtcatttggggaagctttgatca |
285 |
Q |
| |
|
||||| || || | || ||||||||| ||||| ||||||||||||||| ||||||||| | |||| |||||||||||| |
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|
| T |
36387128 |
tatagctcaactatcggatatagcaaaccttgttttgatgataaacaacaccaaaactgtattatgggaaagctttgatca |
36387208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 36368357 - 36368508
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| | | |
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|
| T |
36368357 |
gttggaatctggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctatcaatcgatc |
36368456 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtc |
159 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
36368457 |
gaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtc |
36368508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 36372973 - 36373250
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaacc |
107 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||| || ||| | ||| || ||||||||||||||||||||| | | |
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|
| T |
36372973 |
gttggtatttggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatc |
36373072 |
T |
|
| Q |
108 |
aaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttcattaacacaatcac--agaaatatcactagtgctgt |
205 |
Q |
| |
|
||||| ||||||| |||| ||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||| || || |
|
|
| T |
36373073 |
caaatgaaaatctagtactcaaccacaaccgtagcaccattcccatttggtctaccgatgtttcattaccacaatcacaaagaaatagcaccag---ggt |
36373169 |
T |
|
| Q |
206 |
tatagtaaaattaacagacatagcaaacattgttctgatgataaacaaca-caaaactgtcatttggggaagctttgatca |
285 |
Q |
| |
|
||||| ||||| | || |||||||| ||||||||||||||||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
36373170 |
tatagctcaattatcggatgtagcaaaccttgttctgatgataaacaacaccaaaactgtattatgggaaagctttgatca |
36373250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 36432988 - 36433149
Alignment:
| Q |
11 |
ggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaaccaaa |
110 |
Q |
| |
|
||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| || |
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|
| T |
36432988 |
ggaatttggtactacaatttgtcaatccaaactgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctatcaatcaacccaa |
36433087 |
T |
|
| Q |
111 |
atgggaatctagaactccaccacaaccttagcaccattcccatttggtccactaatgtttca |
172 |
Q |
| |
|
|||| ||||||| ||| || |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
36433088 |
atggaaatctagttctcaacaacaaccttagcaccattcccatttggtctaccgatgtttca |
36433149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 55676581 - 55676492
Alignment:
| Q |
8 |
gttggaatctggtacaacaacttgccgatccaaactgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattcta |
97 |
Q |
| |
|
|||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
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|
| T |
55676581 |
gttggaatctggtacaacaatttgccaatacacactgttgtttgggttgcaaatagagatgctccaatcaatgacacttctggaaatcta |
55676492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 34712306 - 34712389
Alignment:
| Q |
41 |
actgttgtttgggttgcaaatagagatgctcccagcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
34712306 |
actgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctatcaattgaccaaaatggaaatctagaa |
34712389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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