View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4469-Insertion-12 (Length: 248)

Name: NF4469-Insertion-12
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4469-Insertion-12
NF4469-Insertion-12
[»] chr8 (10 HSPs)
chr8 (50-248)||(45531384-45531586)
chr8 (61-248)||(23136651-23136845)
chr8 (143-247)||(23160807-23160913)
chr8 (135-248)||(8351403-8351518)
chr8 (135-248)||(17890663-17890778)
chr8 (135-248)||(18667056-18667170)
chr8 (135-248)||(35136919-35137034)
chr8 (144-248)||(25064194-25064300)
chr8 (135-223)||(45250800-45250890)
chr8 (135-177)||(19742782-19742824)
[»] scaffold0059 (2 HSPs)
scaffold0059 (61-248)||(66931-67117)
scaffold0059 (61-248)||(75036-75222)
[»] chr3 (7 HSPs)
chr3 (61-248)||(20919454-20919640)
chr3 (61-248)||(20928416-20928602)
chr3 (139-248)||(37198063-37198172)
chr3 (135-248)||(2765791-2765906)
chr3 (61-120)||(37198007-37198069)
chr3 (135-248)||(20783815-20783930)
chr3 (135-248)||(50246371-50246486)
[»] chr6 (3 HSPs)
chr6 (61-248)||(1607714-1607903)
chr6 (81-248)||(11550470-11550639)
chr6 (87-248)||(4856646-4856809)
[»] chr2 (6 HSPs)
chr2 (61-248)||(41747554-41747746)
chr2 (135-248)||(16139518-16139633)
chr2 (135-248)||(20103739-20103854)
chr2 (135-248)||(21120084-21120198)
chr2 (135-220)||(24971948-24972035)
chr2 (65-122)||(16311472-16311529)
[»] chr5 (2 HSPs)
chr5 (81-248)||(9662778-9662947)
chr5 (135-222)||(27588856-27588945)
[»] chr4 (2 HSPs)
chr4 (61-123)||(35648158-35648220)
chr4 (135-248)||(14252977-14253092)
[»] scaffold0155 (1 HSPs)
scaffold0155 (135-248)||(26886-27000)
[»] chr1 (1 HSPs)
chr1 (135-248)||(45915205-45915319)
[»] scaffold0216 (2 HSPs)
scaffold0216 (135-237)||(18275-18379)
scaffold0216 (135-248)||(25465-25580)
[»] chr7 (1 HSPs)
chr7 (135-248)||(29494217-29494332)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 248
Target Start/End: Complemental strand, 45531586 - 45531384
Alignment:
Q  50 ccatctctttatcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn----catagaagttt 145  Q
    |||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||             |||||||||||    
T  45531586 ccatctctttctcctccataaacaaattcataagagaaagtattttatgtgttttaaaagcatggaagttttttgtaaaaaaaaaaaaacatagaagttt 45531487  T
Q  146 aatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 245  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531486 aatcacttggttgtagattatggagttgattttattttttgtgtatcttattgttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 45531387  T
Q  246 cta 248  Q
    |||    
T  45531386 cta 45531384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 23136651 - 23136845
Alignment:
Q  61 tcctccataaacaaattcataaaagaaa-----gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcactt 153  Q
    |||||||||||||||||||||||| |||     |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  23136651 tcctccataaacaaattcataaaaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaacaacatagaagtttaatcactt 23136750  T
Q  154 ggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    ||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  23136751 ggttgtagattttggggttgattttattttttgtgtatcttattgttaattgttaattctactttctcaggatcccattgaagagcatgtgtcta 23136845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 23160913 - 23160807
Alignment:
Q  143 tttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagca 240  Q
    |||||||| ||||||||||||||||| | |||||| ||||||  ||||||||| || ||| || | ||||| |||||||||| | | |||||| ||||||    
T  23160913 tttaatcaattggttgtagattatggggctgattttattttttatgtgtatctaattgtttattgctaattctactttctcaaggttccattggagagca 23160814  T
Q  241 tgtgtct 247  Q
    |||||||    
T  23160813 tgtgtct 23160807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 8351403 - 8351518
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  8351403 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcaaggttccatt 8351502  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  8351503 ggagagcatgtgtcta 8351518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 17890778 - 17890663
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||| | | | |||||    
T  17890778 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttcttagggttccatt 17890679  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  17890678 ggagagcatgtgtcta 17890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 18667056 - 18667170
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||||||||||| ||||||||||||||| | | ||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  18667056 cataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 18667154  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  18667155 ggagagcatgtgtcta 18667170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 35136919 - 35137034
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  35136919 catataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 35137018  T
Q  233 gaagagcatgtgtcta 248  Q
    | |||||| |||||||    
T  35137019 ggagagcacgtgtcta 35137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 25064194 - 25064300
Alignment:
Q  144 ttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcat 241  Q
    ||||||||||||||||  ||||||| |||||||| ||||||  | ||||||| || ||| || ||||||  |||||| ||| | | |||||| |||||||    
T  25064194 ttaatcacttggttgtcaattatggggttgattttattttttatttgtatctaattgtttattgttaatgctactttatcagggttccattggagagcat 25064293  T
Q  242 gtgtcta 248  Q
    |||||||    
T  25064294 gtgtcta 25064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 45250890 - 45250800
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcat 223  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||||    
T  45250890 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcat 45250800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 19742782 - 19742824
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgattt 177  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  19742782 catataagattaatcacttggttgtagattatggggttgattt 19742824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 67117 - 66931
Alignment:
Q  61 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 160  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  67117 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 67019  T
Q  161 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  67018 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 66931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 75222 - 75036
Alignment:
Q  61 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 160  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  75222 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 75124  T
Q  161 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  75123 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 75036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 20919454 - 20919640
Alignment:
Q  61 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 160  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20919454 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20919552  T
Q  161 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  20919553 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 20919640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 20928416 - 20928602
Alignment:
Q  61 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 160  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20928416 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20928514  T
Q  161 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  20928515 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 20928602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 37198063 - 37198172
Alignment:
Q  139 gaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagag 238  Q
    |||||||||||||||||||||| ||||||  ||| |||| |||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||    
T  37198063 gaagtttaatcacttggttgtatattatgaggtttattttattttttgtgtatcttattgttaattgttaattctactttctcaggaacccattgaagag 37198162  T
Q  239 catgtgtcta 248  Q
    ||||||||||    
T  37198163 catgtgtcta 37198172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 2765906 - 2765791
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||  |||||| |  |||||| || |||||| ||| ||| |||||||||| | |||||||    
T  2765906 catagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgattctactttctcagggtcccatt 2765807  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  2765806 ggagagcatgtgtcta 2765791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 37198007 - 37198069
Alignment:
Q  61 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttt 120  Q
    |||||||||||||||||||||||| |||   |||||| |||||||||||||||||||||||||    
T  37198007 tcctccataaacaaattcataaaaaaaaaaagtattttctgtgttttaaaagcatggaagttt 37198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 20783930 - 20783815
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | |  ||||    
T  20783930 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggtttcatt 20783831  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  20783830 ggagagcatgtgtcta 20783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 50246486 - 50246371
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||||||||||||||| || |||||| ||||| | ||||||||  |||||  | ||||||| || |||||| ||| ||  |||||||||| ||||| |||    
T  50246486 catagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatgctactttctcaggatcctatt 50246387  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||| ||||    
T  50246386 ggagagcatgtttcta 50246371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 1607903 - 1607714
Alignment:
Q  61 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttg 158  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  1607903 tcctccataaacaaattcataaaaaaaagtattttctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttggttg 1607804  T
Q  159 tagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1607803 tagattatggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtcta 1607714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 11550470 - 11550639
Alignment:
Q  81 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 178  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||           |||||||||||||||| ||||||||||||| ||| ||||||||     
T  11550470 aaaaaaaagtatattctgtgttttaaaagcatggaagttttttgttaaaaaaaaaacatagaagtttaatcatttggttgtagattttggggttgatttt 11550569  T
Q  179 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  11550570 attttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaggagcatgtgtcta 11550639  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 4856809 - 4856646
Alignment:
Q  87 aagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttcattttt 184  Q
    |||||| | ||||||||||||||||||||||||||||||           |||| ||||||||||| ||||||||||||| ||| |||||||| ||||||    
T  4856809 aagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacataaaagtttaatcatttggttgtagattttggggttgattttattttt 4856710  T
Q  185 tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||  |||||||||||||    
T  4856709 tgtgtatcttattgttaatcgttaattctactttctcaggatcccattgtggagcatgtgtcta 4856646  T

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Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 41747554 - 41747746
Alignment:
Q  61 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttgg 155  Q
    |||||||||||||||||||||||| |||   |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  41747554 tcctccataaacaaattcataaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttgg 41747653  T
Q  156 ttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    ||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  41747654 ttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtcta 41747746  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 16139518 - 16139633
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||  | ||||||| || ||| || | ||||  |||||||||| | | |||||    
T  16139518 catataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatctaattgtttattgctaatgctactttctcagggttccatt 16139617  T
Q  233 gaagagcatgtgtcta 248  Q
    | |||| |||||||||    
T  16139618 ggagagtatgtgtcta 16139633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 20103739 - 20103854
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  20103739 catataagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 20103838  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  20103839 ggagagcatgtgtcta 20103854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 21120084 - 21120198
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||||||||||||||| ||||||||||||| | | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||| | ||||| |    
T  21120084 catagaagtttaatcatttggttgtagattgtag-gttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcagggtcccact 21120182  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  21120183 ggagagcatgtgtcta 21120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 24972035 - 24971948
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttct 220  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||    
T  24972035 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttct 24971948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 16311529 - 16311472
Alignment:
Q  65 ccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttt 122  Q
    ||||||| || ||||||||| || ||||||  ||||||||||||||||||||| ||||    
T  16311529 ccataaaaaatttcataaaaaaaggtattttatgtgttttaaaagcatggaagatttt 16311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 9662947 - 9662778
Alignment:
Q  81 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 178  Q
    |||||||||||||| || ||||||||||||||||| |||||||||           |||||||||| ||||||||||||||||||||||  ||||||||     
T  9662947 aaaagaaagtattttctatgttttaaaagcatggatgttttttgtaaacaaaaaaacatagaagttaaatcacttggttgtagattatgtggttgatttt 9662848  T
Q  179 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 248  Q
    ||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  9662847 attttttatgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcaggtgtcta 9662778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 27588856 - 27588945
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctca 222  Q
    |||||||||||||||| ||| ||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||||    
T  27588856 catagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttctca 27588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 35648158 - 35648220
Alignment:
Q  61 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagtttttt 123  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  35648158 tcctccataaacaaattcataaaagaaagaattttctgtgttttaaaagcatggaagtttttt 35648220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 14253092 - 14252977
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  14253092 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 14252993  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  14252992 ggagagcatgtgtcta 14252977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 26886 - 27000
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  26886 catagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 26984  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  26985 ggagagcatgtgtcta 27000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 45915205 - 45915319
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||||||||||| |||||||||||||||  |||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  45915205 cataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 45915303  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  45915304 ggagagcatgtgtcta 45915319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 18275 - 18379
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || || ||| ||| ||  |||||||||| | |||||||    
T  18275 catagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgtcaatggttgatgctactttctcagggtcccatt 18374  T
Q  233 gaaga 237  Q
    |||||    
T  18375 gaaga 18379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 25465 - 25580
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||||||||||||||| ||||||||| |||||   ||||||||  |||||  | ||||||| || |||||| ||| ||  || ||||| | | |||||||    
T  25465 catagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatctaattgttaattgttgatgctattttcttagggtcccatt 25564  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  25565 ggagagcatgtgtcta 25580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 29494217 - 29494332
Alignment:
Q  135 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 232  Q
    |||| ||||||||||| ||||||||||||||| |  |||||||  |||||  | ||||||| || |||||| ||| ||  |||||| ||| | |||||||    
T  29494217 catataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatctaattgttaattgttgatgctactttttcagggtcccatt 29494316  T
Q  233 gaagagcatgtgtcta 248  Q
    | ||||||||||||||    
T  29494317 ggagagcatgtgtcta 29494332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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