View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469-Insertion-4 (Length: 642)
Name: NF4469-Insertion-4
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469-Insertion-4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 15 - 642
Target Start/End: Original strand, 754709 - 755335
Alignment:
| Q |
15 |
atgcctcaccccccataaaccattaaaactgacaacttttcnnnnnnnagtttaaaacaaagtgttcttaaaaattaagttgattaattgttttataaat |
114 |
Q |
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| T |
754709 |
atgcctcaccccctataaaccattgaaactgataacttttctttttttagtttaaaacaaaatgttcctaaaaattaagttgattaattgttttataaat |
754808 |
T |
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| Q |
115 |
cttctcatactagtttgacaatttaaacattattgtttatcttatatttataagtaacaaagaatatcttcatttttattttaggcttacactttttggt |
214 |
Q |
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| T |
754809 |
cttctcatactaatttgacaatttaaacattattgtttatcttatatttataagtaacaaagaatatcttcatttttattttaggcttacactttttggt |
754908 |
T |
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| Q |
215 |
cattaactagaaacgtgttcctagttatttgtaagtgttgattatgttcatattcttaaaagaaatgaacatctacatgactatagtttaattgtannnn |
314 |
Q |
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| T |
754909 |
cattaactagaaacgtgttcctagttatttgtaagtgttgattatgttcatattcttaaaagaaatgaacatctacatgactatagtttaattgtatttt |
755008 |
T |
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| Q |
315 |
nnncttttgaccgctataattttggtgtataaatgtataactaaagtcacagatttatatagttttggaattttggcgtataaatgtgtaactaaatgtc |
414 |
Q |
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| T |
755009 |
tttcttttgaccgctataattttggtgtataaatgtataactaaagtcacagatttatatagttttggaattttggtgtataaatgtctaact-aatgtc |
755107 |
T |
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| Q |
415 |
acaaattttgaaaatgtctcaatttaaatcccttattcattccaaaaatgtagtaatagacacatacagtaaaacaccaatattgatccctgaattcatg |
514 |
Q |
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| T |
755108 |
acaaattttgaaaatgtctcaatttaaatcccctattcattccaaaaatgtagtaatagacacatacagcaaaacaccaatattgatccctgaattcatg |
755207 |
T |
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| Q |
515 |
gtacttactcattttatatttgcagttataataattttacactcatcattcaatcatacattcaggccatacttttttgcacccagatgtatgtttataa |
614 |
Q |
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| T |
755208 |
gtacttactcattttatatgtgcagttataataattttacactcatcattcaatcatacattcaggccatacttttttgcacccaaatgtatgtttataa |
755307 |
T |
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| Q |
615 |
taatggaaatccaagaggttcaccattc |
642 |
Q |
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| T |
755308 |
taatggaaatccaagaggttcaccattc |
755335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 747047 - 747124
Alignment:
| Q |
212 |
ggtcattaactagaaacgtgttcctagttatttgtaagtgttgattatgttcatattcttaaaagaaatgaacatcta |
289 |
Q |
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| T |
747047 |
ggtcattaactagaaacatgttgtatgtcatttgtaagtgttgattatgtccatattcttaaaagaaatgaacttcta |
747124 |
T |
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