View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4469-Insertion-6 (Length: 605)
Name: NF4469-Insertion-6
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469-Insertion-6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Original strand, 49056307 - 49056908
Alignment:
| Q |
7 |
agatacaatattgaaatcaatcaaaattgtccttatatgtccttcatttaccaaagcttacattttatttatacactggaaatggattctctaaaatttt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49056307 |
agatacaatattgaaatcaatcaaaattgtccttatatgtccttcatttaccaaagcttacattttatttatagactggaaatggattctctaaaatttt |
49056406 |
T |
|
| Q |
107 |
ctctcatttttcctaaattctctttatcactctctctatcaatggatgacttgatgcgccaactttctgaacaatatttgcacttttcaagttctgagct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49056407 |
ctctcatttttcctaaattctctttatcactctctctatcaatggatgacttgatgcgccaactttctgaacaatatttgcacttttcaagttctgagct |
49056506 |
T |
|
| Q |
207 |
ttcacttagagcatgtttaaattttggttttaaaatcaaagttttaactcctcagaatgaaacttacacttttgaagaatcgttga-tttcccaatcaat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49056507 |
ctcacttagagcatgtttaaattttggttttaaaatcaaagttttaactcctcagaatgaaacttacacttttgaagaatcgttgattttcccaatcaat |
49056606 |
T |
|
| Q |
306 |
tattataactcc-tagtttattttttgaaatgcaaatttcacttttatgaagctgagtacttaggatccagtcacatattttacaagaagagtatgcaaa |
404 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49056607 |
tattataattccatagtttattttttgaaatgcaaatttcacttttatgaagctgagtacttaggatccagacacatattttacaagaagagtatgcaaa |
49056706 |
T |
|
| Q |
405 |
cacacgaaatattaacaatgatgaacaatcaaaatgtataccaaagaaggactcagcaaaatacataattagctcatcaaaaatttcattnnnnnnntga |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49056707 |
cacacgaaatattaacaatgatgaacaatcaaaatgtataccaaagaaggactcagcaaaatacataattagctcatcaaaaatttcattaaaaaaatga |
49056806 |
T |
|
| Q |
505 |
caggtggattccaaatctgataaaggcatcctaaaatttacaag-nnnnnnnntcccctcaaatcactataaaagtcactctaatgttcatacttcagaa |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49056807 |
caggtggattccaaatctgataaaggcatcctaaaatttacaagaaaaaaaaatcccctcaaatcactataaaagtcactccaatgttcatacttcagaa |
49056906 |
T |
|
| Q |
604 |
ac |
605 |
Q |
| |
|
|| |
|
|
| T |
49056907 |
ac |
49056908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 262 - 544
Target Start/End: Complemental strand, 6556041 - 6555752
Alignment:
| Q |
262 |
aatgaaacttacacttttgaagaatcgttgatttcccaatcaattattataactcc-tagtttattttttgaaatgcaaatttcacttttatgaagctga |
360 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || |||||| ||||||| || ||||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
6556041 |
aatgaaacttacacttttgaagaattgttgattttccgatcaatgattataatcccatagtttattttttgaaatgaaactttcacttttaagaagctga |
6555942 |
T |
|
| Q |
361 |
gtacttaggatccag-tcacatattttacaagaagagtatgcaaacacacgaaatattaacaatgatgaacaatcaaaatgtataccaaagaaggact-- |
457 |
Q |
| |
|
|| |||| |||||| | ||||||||| |||||||||||||| | | || ||||||||||||||||||||||| | | ||||||| ||||||||||| |
|
|
| T |
6555941 |
gttcttaacatccagattacatattttgtaagaagagtatgcatagataccaaatattaacaatgatgaacaattatactgtatacaaaagaaggactta |
6555842 |
T |
|
| Q |
458 |
---cagcaaaatacataattagctcatcaaaaatttcattnnnnnnntgacaggtggattccaaatctgataaaggcatcctaaaattta |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6555841 |
gcaaagcaaaatacataattagctcatcaaaaattacattaaaaaaatgagaggtggacaccaaatctgataaaggcaacctaaaattta |
6555752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University