View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469-Insertion-7 (Length: 583)
Name: NF4469-Insertion-7
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 52150953 - 52150560
Alignment:
| Q |
8 |
attatgtcggtgtttattaaaacctggccaatacgtacactgacctcataaattaattttgttttttcattgtccttttcaaaatttacagatatgagaa |
107 |
Q |
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| T |
52150953 |
attatgtcggtgtttattaaaacctggccaatacgtacactgacctcataaattaattttgttttttcattgtccttttcaaaatttacagatatgagaa |
52150854 |
T |
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| Q |
108 |
aaatattcccctctgaattgtttcacttggttggaagtgaatatacatgtcaatatgcatggttttctcctaacaattgctcactgtagtctattgtgtt |
207 |
Q |
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| T |
52150853 |
aaatattcccctctgaattgtttcacttgggtggaagtgaatatacatgtcaatatgcatggttttctcctaacaattgctcactctagtctattgtgtt |
52150754 |
T |
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| Q |
208 |
aaaatgagtaacaatgcctgtaaatacaatagaaattataacgatcgtaatcaaattaaattgaaaacgtgaacctcaacatagatagtagnnnnnnnna |
307 |
Q |
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| T |
52150753 |
aaaatgagtaacaatgcctgtaaatacaatag-aattataacgatcgttatcaaattaaattgaaaacgtgaacctcaacatagaaagtagtttttttaa |
52150655 |
T |
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| Q |
308 |
actataatattggattctctgcttgcaaagtatgcaactataacattggattatatccttgcaaagtatgcctagaacaaaataataattttaca |
402 |
Q |
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| T |
52150654 |
cttataatattggattctctgcttgcaaagtatgcaactataacattggattatatccttgcaaagtatgcctagaacaaaatagtaattttaca |
52150560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 398 - 583
Target Start/End: Complemental strand, 52150413 - 52150228
Alignment:
| Q |
398 |
ttacattaggttacattgaaattgtgcaaatcttgcagcctctcgcgtgtttttgacctatctccatatttcaaacttggaaatggctttaccttcctcc |
497 |
Q |
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| T |
52150413 |
ttacattaggttacatcgaaattgtgcaaatcttgcagcctctcgcgtgtttttgacctatctccatatttcaaacttggaaatggctttaccttcctcc |
52150314 |
T |
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| Q |
498 |
tccaagtccaaattaaccatgacgcttatcattcacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtaga |
583 |
Q |
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| T |
52150313 |
tccaagtccaaattaaccatgacgcttatcattgacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtaga |
52150228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 52158312 - 52158228
Alignment:
| Q |
53 |
tcataaattaattttgttttttcattgtccttttcaaaatttacagatatgagaaaaatattcccctctgaattgtttcacttgg |
137 |
Q |
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| T |
52158312 |
tcattaatttatttttctttctcattgtctgtttctaaatttacagatattagaaaaatattcccctttgaactatttcacttgg |
52158228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 52145798 - 52145749
Alignment:
| Q |
534 |
acaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtaga |
583 |
Q |
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|||||||| ||||||||||||||||||||| | |||||| ||||| |||| |
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| T |
52145798 |
acaaagaatgagaaagttctctttgctgaagcttcaaaatctgtaataga |
52145749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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