View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469-Insertion-9 (Length: 332)
Name: NF4469-Insertion-9
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469-Insertion-9 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 48478657 - 48478981
Alignment:
| Q |
7 |
aataattcacctcaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccat |
106 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478657 |
aataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccat |
48478756 |
T |
|
| Q |
107 |
tgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478757 |
tgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttg |
48478856 |
T |
|
| Q |
207 |
ttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaaccatataaaggtgcatgaaaacacgtgacactg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
48478857 |
ttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatg-aaccatataaaggtgcatgaaaacgtgtgacactg |
48478955 |
T |
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| Q |
307 |
tcccttttaggaagatagtaattata |
332 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
48478956 |
tcccttttaggaagatagtaattata |
48478981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 48470295 - 48470615
Alignment:
| Q |
7 |
aataattcacctcaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccat |
106 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48470295 |
aataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctaatgtaactttttataaacttataagacattgaaccatccat |
48470394 |
T |
|
| Q |
107 |
tgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttg |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48470395 |
tgtaaaagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcatatccatgataaggcaaaccaattacaagtttg |
48470494 |
T |
|
| Q |
207 |
ttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaaccatataaaggtgcatgaaaacacgtgacactg |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||| ||||||| ||||||||||| ||||||||| |
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| T |
48470495 |
ttagaagaaaatcctctttttctccactctttaatgcctgaatcagtattttcccagtcagatg-aaccgtataaagctgcatgaaaacgtgtgacactg |
48470593 |
T |
|
| Q |
307 |
tcccttttaggaagatagtaat |
328 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
48470594 |
tcccttttaggaagatagtaat |
48470615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 48883626 - 48883307
Alignment:
| Q |
7 |
aataattcacctcaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccat |
106 |
Q |
| |
|
||||||||||| |||| || ||||||||| |||||||||||||||| || |||| || |||||| || |||| |||||||| |||||||||||||||| |
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| T |
48883626 |
aataattcaccacaaatgtctcattataatatgaaactactccatcatcagagccgctaatgtaatttgttatcgacttataacccattgaaccatccat |
48883527 |
T |
|
| Q |
107 |
tgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48883526 |
tgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcatatccatgataaggcaaaccaattacaagtttg |
48883427 |
T |
|
| Q |
207 |
ttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaaccatataaaggtgcatgaaaacacgtgacactg |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |
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| T |
48883426 |
ttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatg-aaccatataaaggtgcatgaaaacgtgtgacattg |
48883328 |
T |
|
| Q |
307 |
tcccttttaggaagatagtaa |
327 |
Q |
| |
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||||||||||||||||||||| |
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| T |
48883327 |
tcccttttaggaagatagtaa |
48883307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 48487126 - 48487446
Alignment:
| Q |
7 |
aataattcacctcaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccat |
106 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||| |||||||||| ||| || ||||||||||| |||||||||||||||||||||||| | |
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| T |
48487126 |
aataattcaccacaaaagtatcattataacatgaaactactccgtcaccaaagcttctaatataactttttatcaacttataagccattgaaccatcctt |
48487225 |
T |
|
| Q |
107 |
tgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttg |
206 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48487226 |
tgtaatagcaggaccagaagttggtttaccaacaccaccttcacctggtttcacaagtgtccaagcaaatccatgataaggcaaaccaattacaagtttg |
48487325 |
T |
|
| Q |
207 |
ttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaaaccatataaaggtgcatgaaaacacgtgacactg |
306 |
Q |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| || || |||| ||| | | || |
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| T |
48487326 |
tgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatg-aaccatacaaagccgcgtggaaacccgtaaaattg |
48487424 |
T |
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| Q |
307 |
tcccttttaggaagatagtaat |
328 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
48487425 |
tcctttttaggaagatagtaat |
48487446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 38816952 - 38816834
Alignment:
| Q |
7 |
aataattcacctcaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccat |
106 |
Q |
| |
|
||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
38816952 |
aataattcaccacaaaagcgtcattataacatgaaactactccatcaccagagcttctaatgtaacttttcatatacttataagccactgaaccatccat |
38816853 |
T |
|
| Q |
107 |
tgtaatagcaggaccagaa |
125 |
Q |
| |
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||||| ||||||||||||| |
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| T |
38816852 |
tgtaaaagcaggaccagaa |
38816834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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