View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469_high_1 (Length: 611)
Name: NF4469_high_1
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 52912968 - 52912629
Alignment:
| Q |
9 |
attatactaatgagagggataagaagatgaatggggagaagtgaatgagtcatttaatttggtggtgggtttagtttaggaataagtataagctttatgt |
108 |
Q |
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| T |
52912968 |
attataataatgagagggataagaagatgaatggggaaaagtgaatgagtcatttaatttggtggtgggtttagttta-------------------tgt |
52912888 |
T |
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| Q |
109 |
gtggatttctatctttttctttatgagtctgtgacagaactgtgaaatggcgttgggtgcatgcatcaagctagctagctagctaggctttaaatacaga |
208 |
Q |
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| T |
52912887 |
gtggatttctatctttttctttatgagtctgtgacagaactgtgaaatggcgttgggtgcat--------caagctagctagctaggctttaaatacaga |
52912796 |
T |
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| Q |
209 |
tgaggtgaggatattgattgggtgacggagaaataatacttctcttctctcacacgcaagtgcatgcacgcgttggacaatcttctcctctt-----aga |
303 |
Q |
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| T |
52912795 |
tgaggtgaggatattgattgggtgacgaagaaataatacttctcttctctcacacgcaagtgcatgcacgcgttggacaatcttctcctcttagagaaga |
52912696 |
T |
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| Q |
304 |
gaagagaaggtgatgtttttgttcttgtttgaaaac----aattagacaaatgattggtcgctgcag |
366 |
Q |
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| T |
52912695 |
gaagagaaggtgatgtttttgttcttgtttgaaaacaattaattagacaaatgattggtcgttgcag |
52912629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 451 - 595
Target Start/End: Complemental strand, 52912584 - 52912440
Alignment:
| Q |
451 |
tttaagttttaaaaactaaagcaatttccaagttgtgatgatgtgaagctcagggataagttaagtatctcaatatattaggctcttgaagctggctcaa |
550 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52912584 |
tttaagttttaaaaactaaagcaatttccaggttgtgatgatgtgaagctcaggggtaagttaagtatctcaatatattaggctcttgaagctggctcaa |
52912485 |
T |
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| Q |
551 |
tccatgctttattttagttattttagaatgagtcctccatttgtt |
595 |
Q |
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| T |
52912484 |
tccatgctttattttagttattttagaatgagtcctccatttgtt |
52912440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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