View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4469_low_2 (Length: 457)
Name: NF4469_low_2
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 33594071 - 33594399
Alignment:
| Q |
14 |
gagacgacaaacttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatta--tttttgttactgttat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33594071 |
gagacgacaaacttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatttattttttgttactgttat |
33594170 |
T |
|
| Q |
112 |
ctannnnnnnagcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtatatgatctaagacatgtacta |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
33594171 |
ctatttttttagcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtat--gatctgagacttgtacta |
33594268 |
T |
|
| Q |
212 |
tttttatttgattgatgatgatagaaggggtgtagatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattttgaaacagctctggt |
311 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33594269 |
tttttatttgattgatgat---agtaggggtgtcgatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattgtgaaacagctctggt |
33594365 |
T |
|
| Q |
312 |
gacttgatgggtcttaatttcttcatcctcatgt |
345 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
33594366 |
gacttgatgggtcttaatttcttcatcatcatgt |
33594399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 343 - 450
Target Start/End: Original strand, 33596525 - 33596632
Alignment:
| Q |
343 |
tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatctttgctatattactctacatgtggatgaaagtga |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33596525 |
tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatttttgctatattactctacatgtggatgaaagtga |
33596624 |
T |
|
| Q |
443 |
tgatgtcc |
450 |
Q |
| |
|
|||||||| |
|
|
| T |
33596625 |
tgatgtcc |
33596632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University