View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469_low_3 (Length: 400)
Name: NF4469_low_3
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 29204589 - 29204884
Alignment:
| Q |
18 |
attttggctgagcgagacattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattcattacttcatttatgaagttgatgttc |
117 |
Q |
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| T |
29204589 |
attttggctgagcgagacattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattcattacttcatttatgaagttgatgttc |
29204688 |
T |
|
| Q |
118 |
gttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacgtgtaaggaatatctgtatttggttatggagtactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
29204689 |
gttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacatgtaaagaaaatctgtatttggttatggagtactt |
29204788 |
T |
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| Q |
218 |
aaatggtggagatctctattctatgttgagaaacttaggtcgcttagatgaagatatggctcgtgtatatattgcagaagttgtaagcatactggc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204789 |
aaatggtggagatctctattctatgttgagaaacttaggttgcttagatgaagatatggctcgtgtatatattgcagaagttgtaagcatactggc |
29204884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 12647287 - 12646992
Alignment:
| Q |
18 |
attttggctgagcgagacattcttatatctgttcgaaacccttttgtggtaagcaggccataccatgtcattcattacttcatttatgaagttgatgttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647287 |
attttggctgagcgagacattcttatatctgttcgaaatccttttgtggtaagcaggccataccatgtcattcattacttcatttatgaagttgatgttc |
12647188 |
T |
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| Q |
118 |
gttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacgtgtaaggaatatctgtatttggttatggagtactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
12647187 |
gttgttaacaaatctaattttcatgtatctgtgacaaacaggtccgattttactattctttcacatgtaaagaaaatctgtatttggttatggagtactt |
12647088 |
T |
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| Q |
218 |
aaatggtggagatctctattctatgttgagaaacttaggtcgcttagatgaagatatggctcgtgtatatattgcagaagttgtaagcatactggc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12647087 |
aaatggtggagatctctattctatgttgagaaacttaggttgcttagatgaagatatggctcgtgtatatattgcagaagttgtaagcatattggc |
12646992 |
T |
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