View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469_low_5 (Length: 264)
Name: NF4469_low_5
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 6038035 - 6037784
Alignment:
| Q |
1 |
tctaaaagtaaatgacattagcctacttttcagaaactagttgacacacaactttcattatactgttatcagtttcatcatctggctcatgattttatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6038035 |
tctaaaagtaaatgacattagcctacttttcagaaactagttgacacacaactttcattatactgttatcagtttcatcatctggctcatgattttatat |
6037936 |
T |
|
| Q |
101 |
gcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatattgacaatcacatcagtctactcatttttcttcaataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037935 |
gcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatattgacaatcacatcagtctactcatttttcttcaataaag |
6037836 |
T |
|
| Q |
201 |
tgatgaatggaaaccagatatgcatgtctcatttcgtgtttttgcctttgct |
252 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037835 |
tgatgaatggaaaccagatatgcatgtctcatttcgtgtttttgcctttgct |
6037784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 31475943 - 31475792
Alignment:
| Q |
62 |
actgttatcagtttcatcatctggctcatgattttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatat |
161 |
Q |
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|||||| ||||||||||||| || |||||||||| |||| |||||||||||| || |||||||||||| |||||||| |||||||||||| || ||| |
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| T |
31475943 |
actgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatacagcttttttagtat |
31475844 |
T |
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| Q |
162 |
tgacaatcacatcagtctactcatttttcttcaataaagtgatgaatggaaa |
213 |
Q |
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|||||||||| || ||||| ||||||| |||| |||||||| | |||||||| |
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| T |
31475843 |
tgacaatcacctctgtctattcattttacttcgataaagtggtaaatggaaa |
31475792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 31407399 - 31407273
Alignment:
| Q |
87 |
tcatgattttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatattgacaatcacatcagtctactcatt |
186 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||| || ||||||||||||| || ||||| ||||| |
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| T |
31407399 |
tcatgattttgtatgcaaatatatggaaaaactctagaagtcttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcatt |
31407300 |
T |
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| Q |
187 |
tttcttcaataaagtgatgaatggaaa |
213 |
Q |
| |
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|||||| |||||||| |||||||||| |
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| T |
31407299 |
tttctttgataaagtggtgaatggaaa |
31407273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 40843325 - 40843174
Alignment:
| Q |
62 |
actgttatcagtttcatcatctggctcatgattttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatat |
161 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||| |||| |||||||||||| || |||||||||||| |||||||| |||||||||||| || ||| |
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| T |
40843325 |
actgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatacagcttttttagtat |
40843226 |
T |
|
| Q |
162 |
tgacaatcacatcagtctactcatttttcttcaataaagtgatgaatggaaa |
213 |
Q |
| |
|
|||||||||| || ||||| || |||| |||| |||||||| | |||||||| |
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|
| T |
40843225 |
tgacaatcacctctgtctattcgttttacttcgataaagtggtaaatggaaa |
40843174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 31494127 - 31493983
Alignment:
| Q |
69 |
tcagtttcatcatctggctcatgattttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatattgacaat |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||||||| | |||| ||||| ||| |||||||| |||||||||||| || |||| ||||| |
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| T |
31494127 |
tcagtttcatcatctgcctcatgattttgtatgcacatatatggcaaaactcaagaaggcttcggttcaaagctcatacagcttttctggtattaacaat |
31494028 |
T |
|
| Q |
169 |
cacatcagtctactcatttttcttcaataaagtgatgaatggaaa |
213 |
Q |
| |
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||| || ||||| ||||||||||| ||||||| |||||||||| |
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| T |
31494027 |
cacctctgtctattcatttttctttggtaaagtggtgaatggaaa |
31493983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 31416540 - 31416397
Alignment:
| Q |
70 |
cagtttcatcatctggctcatgattttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatattgacaatc |
169 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||||| |||| | |||||||||||||| |||||||| |||||||||||| | ||||||||||| |
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| T |
31416540 |
cagtttcatcatctgcctcctgattttgtatgcaaatacatggcaaaactctagaagtcttcggttcaaagctcatacagcttttctagtattgacaatc |
31416441 |
T |
|
| Q |
170 |
acatcagtctactcatttttcttcaataaagtgatgaatggaaa |
213 |
Q |
| |
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|| | ||||| |||||||||| ||||| | ||||||||||| |
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| T |
31416440 |
actgctgtctattcatttttctctgataaaattatgaatggaaa |
31416397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 31288606 - 31288714
Alignment:
| Q |
93 |
ttttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagctttcttgatattgacaatcacatcagtctactcatttttctt |
192 |
Q |
| |
|
|||||| ||||| |||||||| ||||| |||| | || |||||||| ||| |||||||||||| |||| |||||||| ||| | || ||||||||||| |
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| T |
31288606 |
ttttatttgcaatgatatggaaacactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcatttttctt |
31288705 |
T |
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| Q |
193 |
caataaagt |
201 |
Q |
| |
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| ||||||| |
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|
| T |
31288706 |
cgataaagt |
31288714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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