View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4469_low_6 (Length: 263)
Name: NF4469_low_6
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 7488306 - 7488429
Alignment:
| Q |
129 |
aggagtgttaattttgaaaaattatccaagaggcaggaagtgcacttgttctaactattgtgttgctagatgttttggtg-------tagcaatcaatgc |
221 |
Q |
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| T |
7488306 |
aggagtgttaattttgacaaattatccaagaggcaggaagtgcacttgttctaactattgtgttgctagatgttttggtgtagcaactagcaatcaatgc |
7488405 |
T |
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| Q |
222 |
agtgtggtttcgatggtttgtatt |
245 |
Q |
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| T |
7488406 |
agtgtggtttcgatggtttgtatt |
7488429 |
T |
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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 7488059 - 7488141
Alignment:
| Q |
50 |
taaaagagtaatttataaaaacttttttatacatagatataatcaaataacatcaagtgaaaaattgtagatatattttagga |
132 |
Q |
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| T |
7488059 |
taaaagagtaatttataaaaacttttttatacatagatataatcaaataacatcaagtgaaaaattgtagatatattttagga |
7488141 |
T |
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