View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4469_low_7 (Length: 256)
Name: NF4469_low_7
Description: NF4469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4469_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 609134 - 608885
Alignment:
| Q |
1 |
atttgaattttgatttgtgatgatatatatgtctcttttgtcttcaccaactgtatcttgtttacttttgtctctcttctaacttgaattttcatgcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
609134 |
atttgaattttgatttgtgatgatatatatgtctcttttgtcttcaccaactgtatcttgtttacttttgtctctcttctaacttgaattttcatgcact |
609035 |
T |
|
| Q |
101 |
ttctcaatgttattaataaaagtaggtttactag---taaaccttcttccacctttttcattcatggggaagattgcaacacagcctctacctcgaatgg |
197 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
609034 |
ttctcaatgttattgatgaaagtaggtttactagtaataaaccttcttccacctttttcattcatggggaagattgcaacacagcctctacctcgaatgg |
608935 |
T |
|
| Q |
198 |
cttccaattatgatgaggttttcatgcatcaaaccttgctctttgatgat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
608934 |
cttccaattatgatgaggttttcatgcatcaaaccttgctctttgatgat |
608885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University