View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470-Insertion-1 (Length: 909)
Name: NF4470-Insertion-1
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 243 - 571
Target Start/End: Complemental strand, 18285232 - 18284904
Alignment:
| Q |
243 |
tgtatatttcattatgcagaatgaattgtaagaaagtgacttacttcaagactctccaatttcctgttacaattcaattggagaaagttttatcaaattc |
342 |
Q |
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| T |
18285232 |
tgtatatttcattatgcagaatgaattgtaagaaagtgacttacttcaagactctccaatttcctgttacaattcaattggagaaagttttatcaaattc |
18285133 |
T |
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| Q |
343 |
taatattttaaggataaaaatgcttaatttgtcttatttcaagtgattttagatgtacctctttgccctttcttgagtggttagttgagcaaactttgca |
442 |
Q |
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| T |
18285132 |
taatattttaaggataaaaatgcttaatttgtcttatttcaagtgattttagatgtacctctttgccctttcttgtgaggttagttgagcaaactttgca |
18285033 |
T |
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| Q |
443 |
atcacctcctcaaagttgctacattcaccaaagtagaggaaacaataattagacaaggaatgacaatccttgtaaaataaacatatcaatagtaaaacta |
542 |
Q |
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| T |
18285032 |
atcacctcctcaaagttactacattcaccaaagtagaggaaacaatagttagacaaggaatgacaatccttgtaaaataaacatatcaatattaaaacta |
18284933 |
T |
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| Q |
543 |
acattaggaattcatgtccttgaatgctc |
571 |
Q |
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| T |
18284932 |
acattaggaattcatgtccttgaatgctc |
18284904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 598 - 908
Target Start/End: Complemental strand, 18284886 - 18284576
Alignment:
| Q |
598 |
caaagcaatttggaattatcattacacttatgtgtgtttggaaaattttaaccattcacacnnnnnnnnnnnagcttctataatttcacggagagaatgc |
697 |
Q |
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| T |
18284886 |
caaagcaatttggaattatcattacacttatgtgtgtttggaaaattttaaccattcacactttttttttt-agcttctataatttctcggagagaatgt |
18284788 |
T |
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| Q |
698 |
atagggaagtgagaaagagtgagaaaatatgcatcaaaacacaagtataacatgtttggttctacgtttcccactataatctcgcgtcccaatgaccttt |
797 |
Q |
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| T |
18284787 |
ataggaaagtgagaaagagtgagaaaacatgcatcaaaacacacgtataacatgtttggttccacgtttcccactataatctcgcgtcccaatgaccttt |
18284688 |
T |
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| Q |
798 |
ttcccgcgatatccagaagtgacaaatgtaagcttctgcgtcatgtgaaaagtcaccgtgcttttgagaaacatgacacaatatc-aacgaacacttagc |
896 |
Q |
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| T |
18284687 |
ttcccgcgatatccagaagtgacaaatgtaagcttctgcgtcatgtgaaaagtcatcgtgcttttgagaaacatgacacaatatcaaaagaacacttagc |
18284588 |
T |
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| Q |
897 |
atatgtttggat |
908 |
Q |
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| T |
18284587 |
atatgtttggat |
18284576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 18285467 - 18285302
Alignment:
| Q |
8 |
ccttggttcaaccagtggaaccggccaattcagtccggttttcaaaacattgatatccacgacacattgctaaattagttggagctgaacataccttgta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18285467 |
ccttggttcaaccagtggaaccggccaattcagtccggttttcaaaacattgatatccacgacacattgctaaattagttggagctgaacataccttgta |
18285368 |
T |
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| Q |
108 |
ccataaaagtcttgtatattcacatcatgatctaacttcttaaatgttttctttagtgcctgacct |
173 |
Q |
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| T |
18285367 |
ccataaaagtcttgtatattcacatcatgatctaacttcttaaatgttttctttagtgcctgacct |
18285302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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