View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4470-Insertion-2 (Length: 770)

Name: NF4470-Insertion-2
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4470-Insertion-2
NF4470-Insertion-2
[»] chr5 (3 HSPs)
chr5 (8-105)||(39403521-39403618)
chr5 (618-750)||(39411740-39411871)
chr5 (89-133)||(39411937-39411981)
[»] chr7 (11 HSPs)
chr7 (310-381)||(47051340-47051411)
chr7 (9-130)||(47929357-47929478)
chr7 (326-376)||(47929059-47929109)
chr7 (9-119)||(47050956-47051066)
chr7 (324-377)||(48453451-48453504)
chr7 (9-117)||(48106992-48107100)
chr7 (323-381)||(48107525-48107583)
chr7 (9-57)||(48895763-48895811)
chr7 (328-379)||(48571177-48571228)
chr7 (224-258)||(48105519-48105553)
chr7 (323-369)||(48895116-48895162)
[»] chr1 (1 HSPs)
chr1 (310-379)||(50459592-50459661)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 39403618 - 39403521
Alignment:
Q  8 gtaacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagctcatcatgagagaatccttcaatatccctactatcttt 105  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39403618 gtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttttagctcatcatgagagaatccttcaatatccctactatcttt 39403521  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 618 - 750
Target Start/End: Complemental strand, 39411871 - 39411740
Alignment:
Q  618 aaatgaattaagatcttctatggttgaaatgacgaagtcgatgctcttcgattcatggggaattgatgtttaagatataaaaaccatctccattatactc 717  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| |  || |||| ||||||||| |||||||||||||||||||||||||||||    
T  39411871 aaatgaattaagatcttcaatggttgaaatggcgaagtcgatgctcttcaaccca-ggggcattgatgttcaagatataaaaaccatctccattatactc 39411773  T
Q  718 cagtgaagtgagattgaggcagtccactaacat 750  Q
    ||  |||||||  || ||||||| | |||||||    
T  39411772 caacgaagtgacgttaaggcagtgccctaacat 39411740  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 39411981 - 39411937
Alignment:
Q  89 atatccctactatctttatgattttcaaagagccttggatgtaca 133  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  39411981 atatccctactatctttctgattttcaaagagccttggatgtaca 39411937  T

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Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 47051340 - 47051411
Alignment:
Q  310 actcaccctgaacgaaagtttctgcaaaagaggtgaagcttgaaggatgtttaaaatccacaaaagatcata 381  Q
    ||||||| |||  |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  47051340 actcaccatgattgaaagtttctgcaaaagaggagaagcttgaagcatgtttaaaatccacaaaagaccata 47051411  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 47929478 - 47929357
Alignment:
Q  9 taacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagctcatcatgagagaatccttcaatatccctactatctttatg 108  Q
    |||||||| ||| ||||||||||||||||||||| ||| |||||||||| ||||||| ||| |  ||||||||| || ||| |||| || |||| || ||    
T  47929478 taacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataacttttacctcgttgtgagagaatactccaacatccataatatcattctg 47929379  T
Q  109 attttcaaagagccttggatgt 130  Q
    |||||||  || ||||||||||    
T  47929378 attttcatggaaccttggatgt 47929357  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 47929109 - 47929059
Alignment:
Q  326 agtttctgcaaaagaggtgaagcttgaaggatgtttaaaatccacaaaaga 376  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  47929109 agtttctgcagaagaggagaagcttgaaggatgtttaaaatccacaaaaga 47929059  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 47050956 - 47051066
Alignment:
Q  9 taacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagctcatcatgagagaatccttcaatatccctactatctttatg 108  Q
    |||||||| ||| |||| ||||||||||||||||||||   |||||||| ||  |||  ||||||||||| |||   |||| ||||||| ||||||| ||    
T  47050956 taacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatcatgagataatatctcaacatccctaatatctttttg 47051055  T
Q  109 attttcaaaga 119  Q
    |||||||||||    
T  47051056 attttcaaaga 47051066  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 48453451 - 48453504
Alignment:
Q  324 aaagtttctgcaaaagaggtgaagcttgaaggatgtttaaaatccacaaaagat 377  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||    
T  48453451 aaagtttctgcaaaagaggagaaacttgtaggatgtttaaaatccagaaaagat 48453504  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 48106992 - 48107100
Alignment:
Q  9 taacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaattacttttagctcatcatgagagaatccttcaatatccctactatctttatg 108  Q
    |||||||  ||| |||| |||||||||||||||| ||| | |||||||| |||||||  || ||||||||||||  ||||| ||||||  ||||||| ||    
T  48106992 taacaaattcaatttcataccaattgccaacacagcctcctaattcaataacttttacttcgtcatgagagaatgtttcaacatccctgatatctttttg 48107091  T
Q  109 attttcaaa 117  Q
    ||| |||||    
T  48107092 attgtcaaa 48107100  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 48107525 - 48107583
Alignment:
Q  323 gaaagtttctgcaaaagaggtgaagcttgaaggatgtttaaaatccacaaaagatcata 381  Q
    |||||||||||||||| |||  || |||||||||||||||||||||| ||| |||||||    
T  48107525 gaaagtttctgcaaaaaaggacaaacttgaaggatgtttaaaatccataaaggatcata 48107583  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 48895811 - 48895763
Alignment:
Q  9 taacaaacacaaattcaaaccaattgccaacacaaccttcaaattcaat 57  Q
    |||||||| ||| ||||||||||||||||||||||||| | ||||||||    
T  48895811 taacaaactcaatttcaaaccaattgccaacacaacctcccaattcaat 48895763  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 48571177 - 48571228
Alignment:
Q  328 tttctgcaaaagaggtgaagcttgaaggatgtttaaaatccacaaaagatca 379  Q
    ||||||||||| ||| ||||||| |||||||||||| ||||||||| |||||    
T  48571177 tttctgcaaaataggagaagctttaaggatgtttaagatccacaaaggatca 48571228  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 48105519 - 48105553
Alignment:
Q  224 gtgtaaagttaattatgaagccatggataaaaata 258  Q
    ||||||||||||||||||||||||| |||||||||    
T  48105519 gtgtaaagttaattatgaagccatgcataaaaata 48105553  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 48895162 - 48895116
Alignment:
Q  323 gaaagtttctgcaaaagaggtgaagcttgaaggatgtttaaaatcca 369  Q
    |||||||| |||||||||||  |||||||||| ||||||||||||||    
T  48895162 gaaagtttatgcaaaagagggcaagcttgaagaatgtttaaaatcca 48895116  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 50459661 - 50459592
Alignment:
Q  310 actcaccctgaacgaaagtttctgcaaaagaggtgaagcttgaaggatgtttaaaatccacaaaagatca 379  Q
    ||||||| |||  ||||||||||||||  ||||  ||| |||||||||||| | ||||||||||||||||    
T  50459661 actcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttgagaatccacaaaagatca 50459592  T

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