View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4470-Insertion-3 (Length: 357)

Name: NF4470-Insertion-3
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4470-Insertion-3
NF4470-Insertion-3
[»] chr6 (7 HSPs)
chr6 (136-357)||(6270692-6270912)
chr6 (7-136)||(6270445-6270574)
chr6 (10-97)||(6278262-6278349)
chr6 (31-174)||(6236893-6237040)
chr6 (33-186)||(6282363-6282520)
chr6 (31-177)||(6251163-6251311)
chr6 (231-272)||(6278463-6278504)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 136 - 357
Target Start/End: Original strand, 6270692 - 6270912
Alignment:
Q  136 tagttttaattaattatcaatatctagtctttcatttaaataaatccactccttacaaaaaataaaatattgacgcaatcatacaatctagactgttaga 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  6270692 tagttttaattaattatcaatatctagtctttcatttaaataaatccactccttacaaaaaa-aaaatattgacgtaatcatacaatctagactgttaga 6270790  T
Q  236 ttagtattgaacgatcgacttttcaactttgataaatcaggttggtcgtctaattttaatacgttgattcagattgaaaattgcataatcacctaaattg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270791 ttagtattgaacgatcgacttttcaactttgataaatcaggttggtcgtctaattttaatacgttgattcagattgaaaattgcataatcacctaaattg 6270890  T
Q  336 aagcaattcaaattctttttta 357  Q
    ||||||||||||||||||||||    
T  6270891 aagcaattcaaattctttttta 6270912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 6270445 - 6270574
Alignment:
Q  7 attgttttgatgcatggtaaatcattataatatgctaacaaattttcataccattgtaggaataggctagcaacatgatgcacaaggctagaaattttgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6270445 attgttttgatgcatggtaaatcattataatatgctaacaaattttcataccattgtaggaataggctagcaacatgatgcacaaggctagaaattttgt 6270544  T
Q  107 tcaatcaaaggaaaccaagtaagaggtttt 136  Q
    ||||||||||||||||||||||||||||||    
T  6270545 tcaatcaaaggaaaccaagtaagaggtttt 6270574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 6278262 - 6278349
Alignment:
Q  10 gttttgatgcatggtaaatcattataatatgctaacaaattttcataccattgtaggaataggctagcaacatgatgcacaaggctag 97  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||| |  |||||  |||||||||| ||||||||| | ||||||||    
T  6278262 gttttgatgtatggtaaatctttataatatgctaacaaattttcatgctgttgtaaaaataggctagaaacatgatggataaggctag 6278349  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 6236893 - 6237040
Alignment:
Q  31 ttataatatgctaacaaattttcataccattgtaggaataggctagcaacatgatgcacaaggctagaaattttgttcaat---caaaggaaaccaagta 127  Q
    |||||||||||| | |||||||||| | ||||||| || |||||||||| || ||  |||||||||| |||  || |||||   |||||||||||| | |    
T  6236893 ttataatatgcttataaattttcatgctattgtagaaaaaggctagcaatataatagacaaggctagcaatggtgctcaatttgcaaaggaaaccatgca 6236992  T
Q  128 agagg-ttttagttttaattaattatcaatatctagtctttcatttaa 174  Q
    ||||| |||||||||||||||||||||| ||| || ||||| ||||||    
T  6236993 agaggtttttagttttaattaattatcattatttaatcttttatttaa 6237040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 6282363 - 6282520
Alignment:
Q  33 ataatatgctaacaaattttcataccattgtaggaataggctagcaacatgatgcacaaggctagaaattttgttcaat---caaaggaaaccaagtaag 129  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||| |||||   |||||||||| |||  || |||||   |||| ||| ||    |||    
T  6282363 ataatatgctaacaaattttcatgctattgtaggaaaaggctagcaccatgacagacaaggctagcaatgctgctcaatctgcaaaagaatccgttcaag 6282462  T
Q  130 agg-ttttagttttaattaattatcaatatctagtctttcatttaaataaatccactc 186  Q
    ||| ||||| |||||||||| |||||| || ||||||||||||| ||||||| |||||    
T  6282463 aggtttttatttttaattaaatatcaacatttagtctttcatttgaataaattcactc 6282520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 6251163 - 6251311
Alignment:
Q  31 ttataatatgctaacaaattttcataccattgtaggaataggctagcaacatgatgcacaaggctagaaattttgttcaatc---aaaggaaaccaagta 127  Q
    |||||| ||||| ||||| |||||| | |||||||||| |||||||||| |||||| | |||||||| |||  || ||||||   |||||||||||   |    
T  6251163 ttataacatgcttacaaactttcatgctattgtaggaaaaggctagcaatatgatggataaggctagcaatgctgctcaatccgcaaaggaaaccattca 6251262  T
Q  128 agaggtttt-agttttaattaattatcaatatctagtctttcatttaaata 177  Q
    ||||||||| ||||  |||||||||||||||| || | |||||||||||||    
T  6251263 agaggtttttagtt--aattaattatcaatatttaatatttcatttaaata 6251311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 6278463 - 6278504
Alignment:
Q  231 ttagattagtattgaacgatcgacttttcaactttgataaat 272  Q
    |||||||||||||| ||||||||||||| ||||| |||||||    
T  6278463 ttagattagtattggacgatcgactttttaacttcgataaat 6278504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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