View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4470-Insertion-6 (Length: 108)
Name: NF4470-Insertion-6
Description: NF4470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4470-Insertion-6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 5e-41; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 24733410 - 24733310
Alignment:
| Q |
8 |
gaccccaacaacaccagaaatgtgaaagatatatatagtagctggcaggctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaac |
107 |
Q |
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| T |
24733410 |
gaccccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaac |
24733311 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
24733310 |
a |
24733310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 24693255 - 24693351
Alignment:
| Q |
12 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaggctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaaca |
108 |
Q |
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| T |
24693255 |
ccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaaca |
24693351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 24641886 - 24641982
Alignment:
| Q |
12 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaggctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaaca |
108 |
Q |
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| T |
24641886 |
ccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaaca |
24641982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 24720801 - 24720867
Alignment:
| Q |
12 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaggctcatgtcagctgtggatgaaa |
78 |
Q |
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| T |
24720801 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaa |
24720867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 24648649 - 24648749
Alignment:
| Q |
8 |
gaccccaacaacaccagaaatgtgaaagatatatatagtagctggcaggctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaac |
107 |
Q |
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||||||||||||||| || || ||||||||||||||||||| ||| | |||||||||||||||| ||| |||||| |||| | |||||| |||||||||| |
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| T |
24648649 |
gaccccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaac |
24648748 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
24648749 |
a |
24648749 |
T |
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